Protein Info for mRNA_1447 in Rhodosporidium toruloides IFO0880
Name: 9815
Annotation: ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1345 amino acids)
>mRNA_1447 ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044 (Rhodosporidium toruloides IFO0880) MPPTYPYRATALMKYKSAPGGPAFSFGAGEELRVLAAADEEGDWLEGQNGKGEKGVFPSS FVKELEEEEEERGDSASVEAVGTAQKDEAEQKARETVEATPKDDTNVVEGSESTPADEPA LAAESTSPPASTKADAPPAETITSPTVADVTPASTTTTEAPAKSASPPPPAKKPNALASR IAAFNAAAQQQAPPPVAPKPKPRQWARPAAPAAAPPPPAAAPSSDAPAPAPAPAAAPSSD SAPAAPSTDETQTQAQRDFSAEDAQESISRGGGSLRDRIKALQGGLKMEQPPAPGRAPPK PWRKPSAEPDAAEETKEEGEMTQQDEAEILQDAVVKDERPREDETNAQSPGAEVPGFDPA EGDSPFVPSSVAGDDEQEAESKDTTEPASSDAVKQESIAASIAAPAAVEEKEEDSTVSSV AVPVEPEEVKPVQEDSAAANDEDDEESKRANLAARMANLGGQRMGLPMPALPKRAAGPRA RKAKAAVSPAAVEVEEKALGEKDKPAEEAATTDEPVGPAGTDDAEASVVQPPQEEQEEQK GDVLASMGGASALLARDDQDEDESAKAPVDDDDFDSPAPPAPPQRSVPPPAEESEPAVEA DQPSTRASPPPPLSSRPPLPPSFARKDAEDDDLPESGAAPRSPPPPSRPLDPPAFSSGAE TITDEPRPTAHEPEHDQADDTPMSPPPLPKGRPPVPPTFVRQATEQPAAAEQDKDEEEPA SKNSEEPQHPPLPTHPAPLGEQRVTTAAEDAFIAQMPEIVTPPEEAADESTAAPSLNAPT TETIAQGRIEDGHEPADMGQPAWGKVEGTETPAVELSPPALAPKMLAKEETNKAPVEQKQ DEEDEEEEEEDPEIARRRALAARMAKLGGRGPLMGGPMLGFGGVPPKKPAKKKPTSELAE QGDLNAAGGPKPDEPTQRDEEESAPAPPPRRPGGIPAGGFALPGIAPLRLPPQHEPEEQP SQTEEESEPLPTSGKTLAEKSAAATDQAFARTDEEREKMDDAGVAPKDEEGVREEQVVER EEVPPPLPPSRPSTLPPRRSVPTPAAEEHDDDAEDEPEQPDVLSQSRQVEEPEVYGEEPL AHEDEDEMPPPPPPPRPAGGHQSSLPLAPPMPPTRAIPSSPPTHPAPNPTFFQQDDSELA RTATQSSRKSSINPPRSSLDVPFEPLRAASTSSSQAQYPQASKPNLDALLQWSASLGAQV FAAAHTKMSDKQARGLSDADLINFCFSRATDPLPPAGGRYGVKIYEATVEQGKKVPLVRE EDEPRAGDVVTIAAKFKHNLSSKTVGSLESPHVVIVAGWDAKKGKLKVVEVEGKNGTVDE GSYRIDEMRAGQVVVYRVAPKDFFE