Protein Info for mRNA_1454 in Rhodosporidium toruloides IFO0880

Name: 9822
Annotation: K11390 CLYBL citrate lyase subunit beta-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 PF03328: HpcH_HpaI" amino acids 53 to 280 (228 residues), 148.5 bits, see alignment E=1.7e-47 PF15617: C-C_Bond_Lyase" amino acids 255 to 308 (54 residues), 30 bits, see alignment 3.2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>mRNA_1454 K11390 CLYBL citrate lyase subunit beta-like protein (Rhodosporidium toruloides IFO0880)
MLKSGPRFFTTRQAARTLLPHLACPSPTSFISQRPYSAAHASPALSAARAPQRALLYVPG
SNEKALKKALGGGLTGEDAPDVVTLDLEDSVRTEKKTEARRLVREALENAPGALKSKRFV
RINPGQAGLDDLEAVLQSPRIDGMILPKVNTAQDLLAVHDFIDRHSPHAEHKSSLKLIAS
IESPKALLNMQEIASCSDKVGGLLFGAEDYCAASRLIRTPSRREMLFARSSIVTVAHAYG
LAAIDLVCVKYKGEEAQQVLVDECREGREMGFTGKQAIHPAQVSTIQRAFAPSPAEIERA
QAILAQYAEVSTTGAGAYGLKNADGGVDMIDAPMLLQAQSIIAQAEAAGLL