Protein Info for mRNA_1467 in Rhodosporidium toruloides IFO0880

Name: 9835
Annotation: HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1269 PF03200: Glyco_hydro_63" amino acids 1037 to 1125 (89 residues), 22.7 bits, see alignment 2e-09

Best Hits

Predicted SEED Role

"Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1269 amino acids)

>mRNA_1467 HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208 (Rhodosporidium toruloides IFO0880)
MPPSKAPPPVPQQGAPASLSARRMSNAQTGSGSNTPVPPPQLSLNIPATTTTSAGGAGGD
PHVPLKQNLEPREACAPSLNASVQQPSSSAGGAGAASGARLGRSGTVKASSGGAGRREST
DAGYEGGIERHGQANDFVDADDESDADQSTKAAGRPQLNKRGSSGNVRSRDHATGATATA
SSKSPSLPNIPDAESFARSMQKNRNPSTSSHAHPNHLPYRGNANKAGQNAQGQKPRSPSM
SSLRSVEATSHPFPTPGIKQAHGFKFDKWKSIEEQRLDEDERKEKHWKRWGPYLSERQWA
TVREDYSANGDAWTHFPHEHARSRAYRWGEDGIAGLCDNHGRLCFSLAMWNGVDPILKER
LFGVTGHQGNHGEDVKELYWYLDSTPTHSYMKMLYKYPQRPYPYEQLVRESTNRGRDVGE
FEITDTDAFDDNRYWDVFVEYAKDEDCAEGISIRITAYNRGPETATLHLIPQLWFRNTWS
WPKERPTGADMPSLKQVGEGVVQADHKSMGRYYFHANSSPAPIGPRGRKEAQETVFVDDV
VNPELLFTDNDTNFERLYGGKNTVPYTKDAFHDHIIHSHRPPMPEAASEKQNGANGDGYD
SDSTADGASTPRPEDTRQFVNPEKQGTKVGAHYVFRDVPGNGGCAVVRVKLTTKSAEADP
SIQDEEEFDTVIEERRMDSDEFYSRFNSGALSDDLRNIMRQALSGMLWTKQFYMFIQKEW
LEGDPGQPAPPPERKFIRNREWKHMHIEDILSMPDKWEYPFFAIWDSAFHCIPLAMIDPA
YAKKQLDIMTREWYMKPDGALPAYEWNFGDVNPPVHAWATFRVFKIERKMHDREDLGFLE
RVFQKLLLNFTWWVNRKDSAGENVFEGGFLGLDNISPFNRSEKLPTGGTMRQADGTGWMG
FYSLTMLNIALELAKHNPVYEDIASKFFEHFLFIADAMTFHDGEANEVSLWNDEQGFYFD
AIAWAPDSIQQLPVRSLVGLIPLYATLTLEPGTIKRFPGFRKRMEWFIKNRSSISKRNIA
NMSLGGKGDRRLLALANEDRLRRILERMLDENEFLSEYGIRSLSRWHRENPWSMNVNGEE
FSVHYWPGDSHSGMFGGNSNWRGPIWLATTFLLIESLQRFYQYYGSDFTIECPTGSGDMM
NLAQVAAEIQHRVINLFARDNEGNRACNGGSELLNKDPHFRDYVPFHEFFHGDSGKGLGA
SHQTGWTGLVAYFIWSVGSTARLPRTPRTPRSVASEYFHDVMTPGVSETEMSSAFSDVDS
AAEWSPDEL