Protein Info for mRNA_1472 in Rhodosporidium toruloides IFO0880
Name: 9840
Annotation: HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (403 amino acids)
>mRNA_1472 HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850 (Rhodosporidium toruloides IFO0880) MSSRASSEAPAGPSHKRPRSDDLRDASPPQQPGVAGPSRASRRSEEPRSSSSGPAFAVEI PYKPCKRPRKRTASPDPRDSDREPSTEEEDSTGRNGGAARTKRCTRSRSALAAVKVDSDD DEEPSTAESDDEPVVASGSRSLPARSSRNAAPVLDLTDSGDEGFSSLSPGLASGSSSRPN PLANNVAPRPRLNIRPGDSLFSTLGAADDDDDDSLVFEDAAAISAKRIDKGKGKARDAST SAVPLADTTTTTNNAAATTADGEALPSLSHLTCPICFGPPAPLALTSCGHAFCAPCLHAA LVAGPALTPPPAGTAGAGRGRGGRTGPMGEAARLFNTSTGARGRGRTARSGYAGRASAAA TEDEDDEGDPELNKHCPVCRTPLYGGWGKSLRGLVLRMAPVKR