Protein Info for mRNA_1500 in Rhodosporidium toruloides IFO0880

Name: 9868
Annotation: K05770 TSPO, BZRP benzodiazapine receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 83 to 104 (22 residues), see Phobius details amino acids 141 to 142 (2 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details PF03073: TspO_MBR" amino acids 48 to 194 (147 residues), 145.6 bits, see alignment E=5e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>mRNA_1500 K05770 TSPO, BZRP benzodiazapine receptor (Rhodosporidium toruloides IFO0880)
MPIELPGLFYQIPRNPAIAVSSASSLLHSSLRSFHGLACSVVSPHSQVGLPLALGMLNGR
ITKTSVETWFENRRQPPGQPPRWAFPVAWTYLYIGMGAASHLIVKAFDAAVPGSPLKLVA
DSALKLYWAQFVLNQAWTPLFFGLQKPLLALIDIGALTPLVYKLANEAYKVDTRTAFAFV
PYCLWLTYASYLNGACRSLARTCSFRSADEFSRAAGFWWLNEGKAQVDKAKKKDL