Protein Info for mRNA_1508 in Rhodosporidium toruloides IFO0880

Name: 9876
Annotation: KOG3140 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 731 transmembrane" amino acids 366 to 391 (26 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 528 to 549 (22 residues), see Phobius details amino acids 555 to 581 (27 residues), see Phobius details amino acids 593 to 614 (22 residues), see Phobius details PF09335: SNARE_assoc" amino acids 436 to 575 (140 residues), 52.4 bits, see alignment E=3.7e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (731 amino acids)

>mRNA_1508 KOG3140 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MAAQYTHGAGPSRPYSPAPDPSRRIPPSAAPPGTAPSPSSSSSLATNPSRMSPQRTPSSR
AHYSPLAIPSEPLASCSTTPLSSPSLSRPSALSIRPHHYDPSHASHSTTRMRARSINSGK
GVAVPVQLPHLSPTLVGSPVLPGMSSFLETGREAEGYGISPLARQRQEHDRRIRFHPEVG
TDESSGPNASSAEGTEESGSTQSDTPPQTPRDEYDEADAGPRVWVEPPSRRGSNVGYYED
EREAWRTGGEADDDAQSLIAKPDINTRNRSKSLEGMTRMSLRRGKSFTSLVPPSPVKERK
DPFVTVQPAQAVPPPIFEQFEPPPTPDALSDAETGEGATLYPPATGYAAPPLAATPKTLR
DFIPQLAILISLFLSSFAIIAFTISTLPGLFLPHSVSDLPALTATLTTYRSSSFLAELHL
FTVLTLLFLWKQCFSIPGSVLTNILFGALYGTTVGTWWACLWTAAGSTGAYAIALVIAPL
VEYYFAKPLDMTRKALKLPRPGLAPPPPGVAQQAVAPLSSSDLFSHLLLARFFPLLPYSV
LNVISGVLRLPLGPFFTTLLIGSFPFNFATVSIGNLVALAASDPSVPLGDKIWSRQVVLK
LVAVTLVSVLPLAFKDHLKRALSNGGSVAFALERAKDGLARSLFGFGAVPSVSSTSARHQ
PTLSTGGPRSWKRKFSSSIGSSASDLFAFLGLHSASRGVYERVATQGEGGTGVLDEVEMG
GVEEDEGLYDQ