Protein Info for mRNA_1527 in Rhodosporidium toruloides IFO0880

Name: 9895
Annotation: KOG3272 Predicted coiled-coil protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 PF05670: NFACT-R_1" amino acids 2 to 113 (112 residues), 115.1 bits, see alignment E=1.2e-37

Best Hits

Swiss-Prot: 42% identical to CCD25_DANRE: Coiled-coil domain-containing protein 25 (ccdc25) from Danio rerio

KEGG orthology group: None (inferred from 60% identity to cci:CC1G_03405)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>mRNA_1527 KOG3272 Predicted coiled-coil protein (Rhodosporidium toruloides IFO0880)
MVLFYSSNALGDDKPVTTYAGKDKFENEVLLKYYQEQDVWVHVDKLSSPHIYIRMPEGMD
WEKIPEKLLIDAGQLVKAGSIQGNKQAVTIIYTPASNILKRGDFATGAVSFHDDRKVKRF
RIEERVNAIVNRLNKTKVERQVDHEAEKIAYESAQQRAKREIANKQKNADLLLARQRKAD
AEARSYEKLFTGQSGKADDQSEEDQWEASRKEGDFDPDEDFM