Protein Info for mRNA_1546 in Rhodosporidium toruloides IFO0880

Name: 9914
Annotation: K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 965 PF03097: BRO1" amino acids 7 to 396 (390 residues), 397.8 bits, see alignment E=4.7e-123 PF13949: ALIX_LYPXL_bnd" amino acids 441 to 749 (309 residues), 213.6 bits, see alignment E=4.1e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (965 amino acids)

>mRNA_1546 K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23 (Rhodosporidium toruloides IFO0880)
MALPAPLIFVPKKVTQDVDFAPSLRSIIAKQYAESPDSYSDELGALNRARQDALRGSAGS
DTTARDLLYKYFGQLELLELRFPDLRVPFPWSDAFTQVKISQQSLAYEKATVIFNIGATL
SSLAASSPRSAPEGLKRAFHSFRSAAGMFVYINENFLHAPSTDLSKEVVKILVGLMVAQA
TEVFIETMGPATGKSSGLRSKLCMQVSSAYAALVEDVKEWVTKGVFLREWSLLIQTKAKY
FASLANYHRSVADNAAGKYGEALARLQISESLAKEANRFAQSFLGTFNSLAAASSLAADA
PNAMSELAKSHLSMVSEARTKAQKDNDIVYNEVVPSEASLAPIDKGKPVAEPIPIHDVYA
TPEVQKIVGPDLFQRLIPLSVHESASLYSEEKAKLVRAESERVELADEELASALEYMGLP
ASLARFQAGAAAQASLADPGPQVRGWADEVRHGESSGRVDDLFRRRDSLRDQAARHLDQL
ARDLDEESRQCETMRAKYGHLWEQQPSSSGTRSFRQDIRSHRESLEQAAASDAQAQGLWE
GIRGDVALLADSDALERAFVEAVASGGANEASLLDTDLGDDDEAETKKRVEVVSEALSRL
NKIKKERAEVLRDLKEKVQSDDISHILLLNRKGAADVQPNLFATELEKFRPHQQRLTQTL
QAQQSTLADINSGFKALTEGSKARQVQGQWAAAERKKRDLVTRLGRAAQAYSDVRTALDK
GLQFYQDLTDLVEGLQQQVSGWLSGRNSERDRMAGEADIKQRLEGGSGGGASSPSPLDRA
MGSLNLGSGSRSPPPAVPTPPSFGSSYQSSQSPPPPGNPYNVMPITGAFSLGGASRPAPP
SAPSPYQRQPSYPPPRPTPPASSYPAQPSSYASPPPPAPYSQLSRNEVLPPPPPPVQSSY
LPPPPASVNYSSYPSPAGYSSAYGQATQGAQQPPYPPPPPQQQQYSSYNGAQYGAPRPPA
PPRPY