Protein Info for mRNA_1552 in Rhodosporidium toruloides IFO0880

Name: 9920
Annotation: K03115 CSNK2B casein kinase II subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 PF01214: CK_II_beta" amino acids 71 to 274 (204 residues), 251.1 bits, see alignment E=3.3e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>mRNA_1552 K03115 CSNK2B casein kinase II subunit beta (Rhodosporidium toruloides IFO0880)
MARTPADPDRALAATYPDDSAPQPADAEEDTAGATGEAMHDDELEDDEEEEEQQELYESS
SSPSTETDTLTWINWFCSLPGHEYFCEVAEDFIEDDFNLTGLIQLVPFYKEAMEMILDVE
PEDDEGHRVPDVSIVESSAELLYGLIHQRYILTRQGLQQMYAKFDAAHFGVCPRVYCAQT
KLVPCGRSDLPGVDTVKLFCPSCLDMYVPPSSRFQGVDGAFFGTTFPHLLFQTYPPPSPF
PAPQPAPSDPSKRVPTTPSTSLSKIYQPRIYGFRVSERAKSGPRMMWMRMRPRTEGELDW
DERPVGGDAGAEGGGGEGEGALFDDDNIDDEEEESEEEEEEDGGAGGGEGGKKAGGAGKQ
AAPDKMVENVASALDEASLTSPRTNATSPSGMRTTPLPIRTDREIKPLPTSRRSSPAAAS
APTAASAQAVAATATPSCTASEAASATLAASIQRHLAAASDLPLPPPPLATVPARRRDEM
GGAPRVRVA