Protein Info for mRNA_1571 in Rhodosporidium toruloides IFO0880

Name: 9939
Annotation: K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 PF05621: TniB" amino acids 120 to 267 (148 residues), 25.7 bits, see alignment E=5.3e-09 PF00004: AAA" amino acids 134 to 224 (91 residues), 43 bits, see alignment E=4.6e-14 amino acids 528 to 646 (119 residues), 35.4 bits, see alignment E=1e-11 PF17871: AAA_lid_9" amino acids 271 to 370 (100 residues), 111.5 bits, see alignment E=1.4e-35 PF07724: AAA_2" amino acids 522 to 689 (168 residues), 152.9 bits, see alignment E=7.1e-48 PF00158: Sigma54_activat" amino acids 525 to 628 (104 residues), 34.7 bits, see alignment E=1.1e-11 PF07728: AAA_5" amino acids 527 to 647 (121 residues), 48.9 bits, see alignment E=5.4e-16 PF10431: ClpB_D2-small" amino acids 696 to 782 (87 residues), 62.6 bits, see alignment E=2.2e-20

Best Hits

KEGG orthology group: K03695, ATP-dependent Clp protease ATP-binding subunit ClpB (inferred from 58% identity to scm:SCHCODRAFT_54163)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (826 amino acids)

>mRNA_1571 K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB (Rhodosporidium toruloides IFO0880)
MLTRHLARSLRTPPPASSLAHPSSRLARTAPAALSLATHCHPPSTRTLSTTAPRSQRGGA
PPPPGSGGGGGGGFPIGNIFGGGQKREPGQALKDNGIDLTELARKGKLDPVVGRSDETKR
LIEILSRRSKNNPLLVGPAGVGKTAIVEGLAQKIVAGEVPESLKNKRLISIDLSTLMSGT
AVRGSFEEKMNNLIKDLEEADDVIAFIDEIHQILNLGKAEGSLDASNMLKPSLARGLQIA
GATTLNEYRTSIEKDAALTRRFQPVMVDEPSVEQAITMLRGLKPKLEVHHGVTISDAALV
TAAVMSNRYISDRHLPDKAIDLVDEASASLRLRKESPPEELDALKRTITTLQIELSSLGK
DTDPVAAERRTAIEEELSTLKKDAEAMERKWRAERERAEEIRKTREEIEVRRFELEEAQR
KGDYQRASELRYSVLPELERKLPRDGEGDKGGEGARVTSDDIALVLAKATGIPTATLMRG
DRSRLLDLENVLSSRVKGQEPAISAVASAIRLSRAGLHAGNRPVASFLFLGSTGTGKTEM
AKTLAAELTGTEKNLVVINMSEFQDKHTVSRLIGAPPGYVGFEDAGQLTEAIRRKPYSVL
LLDEFEKAHPDVANILLQVLDEGKLTDSQGRAVDFKNTTIILTSNMGSDILAEDGSTLPD
GTVTDSAKERVLARVQSMYPPELLNRLDEQIVFNSLSPESIAKIVDLRLSEVQHTLNHSS
AAPERRIGLLVEQGARDWLAQNGYQPRWGARALNRLISTHVRRPLAEAILRGELGNGDTA
RVRLNRDGSGLEVVPIRANQPEDVKLAEEVEGDLDLANEVAGGEEK