Protein Info for mRNA_1576 in Rhodosporidium toruloides IFO0880

Name: 9944
Annotation: KOG0737 AAA+-type ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF07728: AAA_5" amino acids 125 to 267 (143 residues), 26.2 bits, see alignment E=2.9e-09 PF13401: AAA_22" amino acids 126 to 226 (101 residues), 31.7 bits, see alignment E=7e-11 PF00004: AAA" amino acids 126 to 274 (149 residues), 122.7 bits, see alignment E=5.8e-39 PF17862: AAA_lid_3" amino acids 298 to 333 (36 residues), 36.1 bits, see alignment 1.8e-12

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>mRNA_1576 KOG0737 AAA+-type ATPase (Rhodosporidium toruloides IFO0880)
MPPSAQTKKLLLDGSLFILSQVAFYYAFKVVMNQMDPQKSKRKESKAKSKEALGKLGVDL
STLELSEHEEIIAGEVVAPEDIHVTFSDVGGLDPIISQLREAVIFPLCYPQLFESSAGLF
GAPKGVLLYGPPGCGKTMLAKALARESGATFINMHVSTLTDKWQVFFNKCDQLEADKRPS
YRFGESNKLVAALFSLARKLQPSIIFIDEIDSFLRERSRADHEVTGMMKAEFMSMWDGLT
TTNDTRILVLGATNRPNDIDSAILRRMPKRFSIKLPDASQRRNILQLMLKDIKLDNGFDL
EGLVRKTDGLSGSDLKEACRNAAMVPVREYMRQNLGTGGQIDVEKVKAGKFNIRPLRLSD
FFVSDYAQTGTGGAMEQEGLD