Protein Info for mRNA_1578 in Rhodosporidium toruloides IFO0880

Name: 9946
Annotation: K20237 NUD1 protein NUD1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1917 PF13855: LRR_8" amino acids 1503 to 1558 (56 residues), 36.3 bits, see alignment (E = 5.7e-13) amino acids 1569 to 1625 (57 residues), 29.7 bits, see alignment (E = 6.5e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1917 amino acids)

>mRNA_1578 K20237 NUD1 protein NUD1 (Rhodosporidium toruloides IFO0880)
MAHALLCSPATRFSPDSSSDSLNSLSPATPPPPSLDFLSHLGDGSFDREASPTGQFDTPT
RRNGYVQEEKDQVPRQSTLKGGVGIELATPQPDWVTHELGEDWIAQPGAEVDDDGASSRG
GEGSTTILAPSFATPSSQSPTLLPPSPLPPFPPTTPSYLLRTQPRIPSSLRHAFTAASSP
SSSVASVSVREHATDTEAETDTDNHTRDMSISAGSVVEIAHTDAEADDSLAAPPLIEFSV
DLPPSTEATDEENDESVGSAGTVVVNSDSVVDRGSNAARGNEQLQAAVRALRGPNAGLFM
ATEGEAEAEEAEEDEAGGKKAKALLSLFEPPSPDAVPPSNPLPPSARPAPSLSSFTFSPP
SILPPTSWRSLNHFSPSPPPPPQTDEDRTPLARSRTRLGTGVEEVDTPRAEEGRKRPPAL
GRRERFLRRSVRAEERQQEREEEGGESSDDAPFVPTPVEGGTATTTSEDDEDSTNEEEEP
REGGHAGGSGPLDMKVKPGLGWSSDEDEGSLSRDDEEADFPSRSMSGLPTPPSFDAAPLP
TVYEGSEPASSVRSRASLVPPSQSSLPLPSSPARIPIPSPLLHPPASPLKLFQPTYDTVT
RHHLAALVDEIDALSSNRDEYLREGAPAPLRQSQEREENISDEGFLGEEGEKRSSKRIKL
SPRSEFASRFRADGEGGLSRVEEEEDEENQTPARDERSRRGGRRSSRSFSISPSARRPTP
LRSARRPPPSTRRRTANTSSASSLLSLPTLPSPVPTSPGGSRRRREAVEEAERVMERIRR
REEEKERAREGTVVSRVEENNRSSASLSATPVRGEASSTQHDDTSPVPLPHLAAAASASL
RSVLGSPAPAPASPSLASSSSLGSGARLPSTLLQEKGGSIGRRHFARTPVGAKKSGSSKA
SGLHVGVLKGLWGNEAEDADSEKEVEPAPASAVEPEPPAVATPPTSTRHARQTSLTTLHP
SLPATQRLLASAGASAREKGLVFDSEQGRWIRTPRRLATHAEESSHAETSPEEDPLAAAQ
DDEDEEDPFKDFSELRSDKSIISPPAANPATDAAVNLDHLPHAGDGSGSLPRRFAESVSG
LGITKGTPPLTGTATSAAKPASSAVQQSPAGACYFSPPPAETRPAEEGPDGPHLVLESED
SATWGRGDALRKKEEAQKLFIGEEDGQEESELDDFAETSMLGLYQAAHGEVDEEEDTTAE
ARPAPTVVARHQPSHSTPPTTLAPTPATPFSATRPPPAASAPQPPRSALKAPRAQSDPLA
ATPLARVAATAGPPRSVSFSDGKTSGKIEGLVPLEPYKPFAFPSNAPVGFGSGLKFEMGN
GPGSLEFDEGFETQSEVAETDEDDTTITQEQVIAADAPSVRSRKIGEAFESLARGPAESP
FAAQFTRAANRDSSLALSVNSSTTSSPTTAFVRPRSRSFTRTHSQNGNATFLTECSFGVS
HDRLLQFITDVEPFEPDWEGLRSIDLSRKKVESVVRLKEFLPKLDEVNLNENDISYLTGI
PSTLRTLLVSSNRLTSLASFSHLRNLERLDLSNNQLESVHQLACLKHLRELKADGNEISS
IEGLAQLDSLVRLSLKSNRLHSVDFGKTKWTRLETLHLARNQIVALHGLEHLVSLTTLNL
EHNALTAIEPHADMPKLRVLRLSDNPLSVLDVSFAPKLRTLYADSTRLGALEGTDQLRKL
ENLSLRDQSGEGLSLSMPHIRDVKRLYLSGNPLPSSFPSEKFFNLVYLELAMCQLTSLPA
DLASVIPNVRVLNLDYNFLHDLAPLQGLSRLTKLSVVGARLAKARPVATVLASLLELESV
DLRMNPFTLAIYPPLVPPSDSLLPSHSEHRILHPDSLPSSIPSDAIADPATHSSAWQALD
TKFRRALPDEWYHRRAAYRAAILQSVPSLVRLDGSDAAKERPKLARRVEKLAMRRSG