Protein Info for mRNA_1602 in Rhodosporidium toruloides IFO0880

Name: 9970
Annotation: HMMPfam-Protein of unknown function (DUF2013)-PF09431

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 739 PF09431: DUF2013" amino acids 237 to 399 (163 residues), 178.6 bits, see alignment E=3.7e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (739 amino acids)

>mRNA_1602 HMMPfam-Protein of unknown function (DUF2013)-PF09431 (Rhodosporidium toruloides IFO0880)
MEAQQEWHFSTAEQFWQELDELIAVPPDSSLEELDYCLRNYIAFASSFMDQFLAEPGALD
HALLALLSSPLFTDHADRMTDNIVSSIVHPDASSATLFISLMLVLHLGEGANPLTTAGVW
ANPQKPGAGVTVGSSKVFRRMRKRWNEVVPVLTKWVWDAGVVEDRHSGEPSEPEKRLDQQ
VGMPAEGWEERVGTAATAVLYEMCRVQKLTLDELSDFTFDFIFHLFSLVERTRDAEDETF
NYSLIKLIIALNEQFMVCTVPAAPKGSGQLPPPILPTVVGKTKRERGPNTVLEVLKEKEH
ESKTFGENIIFILNRADGTPDSLCVSLLILKILYLLFTTSGTQEYFYTNDLCVLVDVFIR
ELYNLGEESEGLKHTYLRVLHPLLTNTQLRHYPYKRQELRRVLECLIAPSYYRDCDPTTR
RLVERNLRGSWCQGLRSAEAVAGGRSLGSDSATGSTLSVDAVARADDEAVRKHKRKHSHR
KSRRQASLDETVSSGAYGNAGVTIADGRTVLQPLAERAVTGQAPEVVRSSYATYTSTSPE
LESRFPTTPPAPDYDLPPSIPSISAGHDILDPVARRLMAGSPRSSTHPPTSSSLAPPLVH
PRPRSTSLSAASYRSSTHGLGLSESPPPPLPPSPAMSSASLSASVGDLPSACATPRRRRP
PPPPTDGGSRPRTPALQTLLPQSTGSSDGSGPPSPRTTTTTSGRRRPPPPPTQAGRASPR
VHGGFEEDTRRRLEGAAIS