Protein Info for mRNA_1607 in Rhodosporidium toruloides IFO0880

Name: 9975
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 883 transmembrane" amino acids 512 to 530 (19 residues), see Phobius details amino acids 551 to 567 (17 residues), see Phobius details amino acids 587 to 603 (17 residues), see Phobius details PF04082: Fungal_trans" amino acids 246 to 430 (185 residues), 59.9 bits, see alignment E=1.1e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (883 amino acids)

>mRNA_1607 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MATADSRRPAKRGVLSCAECRRLKLKCDRAPWPCGSCVKRGCASICPDQTLTPTRTSKLA
ASASTLADRVEQLEAIMKSQGLGGLVPPLTDAEVAAYGTASSVGARQRQMLDAMEAVEND
RAAGGAGAQDDEDVEAIGAAVGSLTMRNDGSARFLGVGAALAYTGEQDSSDSADDGTDGE
GPNPNGGGGGSSARLPRRISPPSTSHSSSLPPELESPGFPFIQLRNSLKPIQDLLPAKEE
ATRLAQVYWDRCAYMFAPICHETYWDDYFPTAFSSDPQGVNTGTKLACVVMTLSLGSIFD
PSAPPILSPLAHRFYAAGQAALSASRFLSHPTLAGIQAIHLSVNILFSRPNVKEGGEMFW
PVYGLAIRAAQSMGLHRDPALWGLDEKEVERRRTTFWEVACLDRLQAFLNGRPYTLQNKD
FDTKMPTEKDAYHVERFKLSLVFGDTIDELFSVKPVTYPAIKSLDEKVRKAYSELPESCR
CSALPEEAFSTPGSVPMHSPPNLPAAGESTTLVLQQHMLAILYSVLLLYLHKIPFSQALD
KYSQEPLQSPFASSVTIVILEASAYIIKLVKSWNQVDEVVGPRWWNQAWHAFVAAAAQAS
LVIKSPGSMLAGHAWQQLNEACSLFENAAPRGPTYANLLPRIQLLRQKAHDVLVSVRHIQ
PTLVPLPPDAQAVESSELNALGTSTQLSRGRPRTATIKEEGGANSEEAAAAALSLLQPAP
WQTLDFAAPGAGPSSIPQYAHPQQYPQPSNPPQDQQQQHRPSTSDSQQQQHARGPFGYAP
PGSHPAMPVYQPYPAPGPSMPHYLPSQHPPPAMYNSPDPALFGSQEAYRYATQQQQQQLP
SGSVGPAGEMWFASGMGMGGPPPPQGPQDSWSIWGDMMRNAGG