Protein Info for mRNA_1611 in Rhodosporidium toruloides IFO0880

Name: 9979
Annotation: K04708 E1.1.1.102 3-dehydrosphinganine reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details PF00106: adh_short" amino acids 52 to 212 (161 residues), 88 bits, see alignment E=8.9e-29 PF08659: KR" amino acids 55 to 209 (155 residues), 38.3 bits, see alignment E=2e-13 PF13561: adh_short_C2" amino acids 60 to 213 (154 residues), 57.8 bits, see alignment E=1.9e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>mRNA_1611 K04708 E1.1.1.102 3-dehydrosphinganine reductase (Rhodosporidium toruloides IFO0880)
MTWDSRAQVFQTLDRLRTNPAAAAVAVLAVLISLGLMGLFSRAQRFEVAGKHCYIGGGSE
GLGLSLACQLADHGAHVTIVSRSQSKLDRALQELETHRQKPSQVFQALSCDLTDPAAAAS
TLRQACKATPSSSPDYLFACAGGCVPGYFAEMPAEQHWQCMEWNFRTCLNTVHEGVKAMK
EDGKKGGGVVLTSSVLALMSFAGYSSYSPSKSRRSTTQRAATLRHFRSPLPPRHHFLTRL
RERAAAETGDYEEDRGTGRGDEAGCRSEGADQGRRARRLLHYLRTSRPHAPQQPRHHAAQ
QHSFRLFLGSRGYYCVPHLAADVSGRQSQQGGEAYTRVVG