Protein Info for mRNA_1635 in Rhodosporidium toruloides IFO0880

Name: 10003
Annotation: K18748 SSD1 protein SSD1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1450 PF17849: OB_Dis3" amino acids 769 to 843 (75 residues), 89.6 bits, see alignment 1.6e-29 PF00773: RNB" amino acids 875 to 1211 (337 residues), 341.1 bits, see alignment E=1.2e-105 PF17877: Dis3l2_C_term" amino acids 1273 to 1359 (87 residues), 81.4 bits, see alignment 7.3e-27

Best Hits

Predicted SEED Role

"3'-to-5' exoribonuclease RNase R" in subsystem RNA processing and degradation, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1450 amino acids)

>mRNA_1635 K18748 SSD1 protein SSD1 (Rhodosporidium toruloides IFO0880)
MSSPTDTTKPASGSSGTKDDTQSAQQPTRKQAASPNSPARNRSQHDRKRSTSRGNGGASS
PTNERKPQNQQGGGGGAGGSHGRRSSRGGGHAGNGGGASGRRSSGGGHGGSSGGQQHHRR
ESQQNDGLANLQNVISDMPPPPGGPARSSSSQPSSPARQRSQPGGGHRKNPSGTSVPSIS
APPPTLPPAANTLNPTAGGFQPGMLGPIHDMIDEGLVTPTASRFDLMTGMPRSPTAPSTL
PDAGTGFGGVAAVNQSAFVFPPPQPATQGLGISNQQQQALALQQQQFQLAQLAAGMNPAL
AGAGGGLNEASELIAEQLAIQQQLENLRLQQESLMARFGDMQATLTGQAAPPVSAPPPSG
PSGQHRRVSSSSGHQHQPSGAMGSFGLPGGVGAAASQQQLPKGHGRRHSVQTGKTAPGGA
NGSTAAPSGNGGFGTGFQFPPRPQGQQQGTPTQQARFLEEDPFASGNDSPSGGRTMGHHR
RQSGSVSSLGGWSMNMSQSSTNNLAEAQAHLQALGAYRASSGHARVPSFGMSAIGPGGQG
GPGQLAMAGYGGGIPQPGMGGPNGQNQMRKTLFAPYLPQASIPPLLAAGKLVIGTLRVNK
RNRSDAYVATDVLDADIYICGSKDRNRALEGDIVAVELLDVDEVWGTKKDKEEKKRRKEE
QASYDPKTARDLRKQDKKKDDVEVEGQGLLLFEDEEVTDETKPQFAGHVVAVLERAPGQL
FSGMLGVLRPSSAATQQKQDAERREREGVDLRGGHGQSNGSSQPPPKIIWFRPTDKRVPL
IAIPTEQAPADFVEHSEKYSDRLFVACIKRWPITSLHPFGQLVEELGPIGDIETETNALL
KDCNFTAEDFSDSVNKCLPPTPWSIPDRELQPDVRRDLRDKRVFTIDPETAKDLDDALHI
IQNEDGTFEVGVHIADVSHFVKPNTPLDREARKRATTVYLVQRAVPMLPPTLSEELCSLN
AGSDKLTFSVIFTLTPEGQIVSTWFGKTVINSKVKLAYSDAQHVIDNGTLPEGKIADAEL
REGVETDVKRLAGIAKHLRHRRFDSGALRIDNVKVSFRLDEFGLPVDAHEYARKEANELI
EEFMLMANIAVAGKIASGLPDQSLLRRHEEPIDRRLDAFVQRMRRLGLDIDGSSSHALMD
SIVKITDPGERLTLQHLSTRSMQRAKYFCTGMLDISKYRHYALNVPLYTHFTSPIRRYAD
VIVHRQLEAVLIAQAAAASAETPTEAKFSLDAEAVSKIAQTCNVKKEAARLAQEQSQHLF
LCVLIDDLTKRYGPVIRYGTVIGVLDQAFDVLVSEFGVEKRVHVDQMPVESTVYDERENS
LQIFWKKGVDVLAWLAESNQDEHLKRLRAHAHHHSKMMEADSGKGEAESRLFDDDEEEEE
GEVKQERRVLETAQHKKSRDRTPLKFQNLNTEHGHCAQTVKTLDVVPVIVSADITKSPPV
LRVVAVSPFA