Protein Info for mRNA_1638 in Rhodosporidium toruloides IFO0880

Name: 10006
Annotation: K11807 WDTC1 WD and tetratricopeptide repeats protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 744 PF00400: WD40" amino acids 202 to 236 (35 residues), 16.3 bits, see alignment (E = 7.7e-07) amino acids 572 to 608 (37 residues), 13.8 bits, see alignment 4.6e-06

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (744 amino acids)

>mRNA_1638 K11807 WDTC1 WD and tetratricopeptide repeats protein 1 (Rhodosporidium toruloides IFO0880)
MLSGAIPTSSSPFLDLTSLPLYPPHRPSLLSTTTYPSLVASPAWQSRFDLLQVLGEKDQH
GGGWGGRGHTVDRDAYGSTGCVNASCWDEQTGRLATAGDDTKICIWAPGVGDTLRDDGSE
VMSPGLGFGLSEVIDTGHRANIFSVKFAPGMSNRLFSCAGDSTVRVFDLSLATNPQLSSV
TIHPPASSVHKPWTHHEDATACTRVFRCHFDRVKRVATEASPDVFLTCSEDGTVRQHDLR
EHHNCRTSRLQAPDDVDCPPPLADYPGLSLYSLTINKLRPHLFVVAGTSPYAFLHDRRMI
RAPMLRDWGIAPPSDPSSSSLTQCVRRFGVPHPTTPHKGEISHHIVAAKLSPDNPRDLLL
SYSSAGIYLFDTDGETYERPPPPPPPLKQSKGKQRAEFSDDYEHEDDEDAMSSPVPEPSS
SPHKSSTSTPAQPFGANEHKRSAKKRGSARSAESSTGELPHKRLRDEGSEVGHEGEGAGF
ADGSAVVGGAEERQEALHGEAGGDADESEDSSDQEELMEDSEHEGDSSAQSDGGEDAEDG
TEEEDGEEEEEDFLPRGRRREYHADVPMVAPRQSYTGHANTQTVKDVNFLNKDTVISGSD
DGNFFTWDRESGKVTGIWKGDDSVVNVMTPSPTLPIVAISGIEETVKLFGPASDLAAAEK
ANLAKDYERIKARNARGETGTSFPRIAPNDFLSFILANMRAGEGDEAEDGDEEEGSPPAR
RPMRRIRIVRGDPDDPASADCAIM