Protein Info for mRNA_1646 in Rhodosporidium toruloides IFO0880

Name: 10014
Annotation: KOG2182 Hydrolytic enzymes of the alpha/beta hydrolase fold

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF05577: Peptidase_S28" amino acids 98 to 292 (195 residues), 121.7 bits, see alignment E=1.8e-39 amino acids 412 to 535 (124 residues), 32.4 bits, see alignment E=2.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>mRNA_1646 KOG2182 Hydrolytic enzymes of the alpha/beta hydrolase fold (Rhodosporidium toruloides IFO0880)
MHTANALVLGLLGSLALASRPLSSNELASKGTTPALPLGLWKEAKRRRRHDDGARGPWKE
SQTGQLPFLSRPKPSASCQEHYFDQLVSHDPHIPSTTPNETWQQRYWFDATFYKPGGPVF
LLDAGETDGEGRLPFLSQGILRILSEATNGIGIVFEHRYYGKSFPVSDLTTDSLRFLTTR
QSLDDGAHFARNIVLPGLEDIDIRAGGSTPWIYYGGSYAGAKAALARKLYPDVFAGGIAS
SAVTAAIEDYWQYYEPIRQNGPSDCIDRLVNHTSLIDSLLAFEQPALTSALKGYFGLGNV
TSDADFVNALAIPLGSWQARNWDPSVGSTRFFEFCDTLTANSSSVHEVDLFQPAQLAALP
SLPKDPRKALASFAAYVSYVREHVATLCPPDTAQDDCFGTDEYSGDELDDYEWKSWAYQF
CTEWGYFIGAPPDSKHPSLVSRLLTTEYTGKICRKAFPPGDLNSVPARPNVTAINQYGGF
NFSYPRLAFVDGSEDPWIYATPHSPLAPHHGHRHSTTSEPFLLIKGGVHHWDENGRPSPP
EPEEIQRVHREDVEFVRAWLEEWREEQREKERKRRGRWRWEGEGRERSRARWT