Protein Info for mRNA_1647 in Rhodosporidium toruloides IFO0880

Name: 10015
Annotation: K02930 RP-L4e, RPL4 large subunit ribosomal protein L4e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 PF00573: Ribosomal_L4" amino acids 21 to 260 (240 residues), 132.6 bits, see alignment E=1.5e-42 PF14374: Ribos_L4_asso_C" amino acids 273 to 347 (75 residues), 88.6 bits, see alignment E=2.3e-29

Best Hits

Swiss-Prot: 65% identical to RL4B_SCHPO: 60S ribosomal protein L4-B (rpl401) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02930, large subunit ribosomal protein L4e (inferred from 69% identity to cci:CC1G_11636)

Predicted SEED Role

"LSU ribosomal protein L1e (L4p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (373 amino acids)

>mRNA_1647 K02930 RP-L4e, RPL4 large subunit ribosomal protein L4e (Rhodosporidium toruloides IFO0880)
MASRPVVQVRALEGESSSTLPLPAVFTAPIRSDVVAQIHKSVAKNRRQPYAVAENAGHQT
SAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRKWHIKVAVNQRRF
ATVSAVAATALPSLVLARGHRIEGVAEIPLVVADNVESIKKTKEAVAALQTLQAHADVAK
VISSKKVRAGRGKSRNRRYRQRRGPLVVYNEDNGIVKAFRNIPGVETANVRSLNLLQLAP
GGHLGRFVIWTAGAFAKLDEVYGTYEKGSALKSGYTLPINKVTNTDISAVINSAEVQAVV
REAGPSRTKKTSGQKKNPLKNAAILARLNPYAASAKRIAAAAEKRAAAGGKKQGHAQKQV
KASKGFKETLLSA