Protein Info for mRNA_1655 in Rhodosporidium toruloides IFO0880

Name: 10023
Annotation: HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 77 to 98 (22 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details amino acids 318 to 341 (24 residues), see Phobius details PF04193: PQ-loop" amino acids 75 to 131 (57 residues), 33.3 bits, see alignment E=1.6e-12 amino acids 256 to 311 (56 residues), 52.8 bits, see alignment 1.4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>mRNA_1655 HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679 (Rhodosporidium toruloides IFO0880)
MSRLPPLGRTVALAALSCALIATAASASPTLFGPATAPLVAATTGHGASAALPPPGPPGS
GDGPVRAFDGYPRLANAVGWASIASWILVYTDPIVLCVREQSGESLSLLFLAIWLTGDIT
NFLGSIWQGLIPTVIILALYYTVCDVILIFQVFYYRRKRRLHPELYEPLATSDGLNGSGV
ASLPTPASEQTPLLSAFSAHAPTEPAFSPAVQRARDLLFYGAGIAIIVSAGVIAWFAGKN
KNKEGRVVEEWDTSAQIVGWVSAFLYLGSRLPQLALNRKTKCVGLSIFMFLLAVAGNSTY
VASILLTSMSPQHLLINAPWLVGSGGTIFLDFIVLGQFAYYAKERRLEAEAAKNGVFAAD
DDALARREVFEDDDEEA