Protein Info for mRNA_1671 in Rhodosporidium toruloides IFO0880

Name: 10039
Annotation: K13344 PEX13 peroxin-13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 119 to 137 (19 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details PF04088: Peroxin-13_N" amino acids 110 to 247 (138 residues), 162.5 bits, see alignment E=1.2e-51 PF07653: SH3_2" amino acids 302 to 374 (73 residues), 40.5 bits, see alignment E=2.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>mRNA_1671 K13344 PEX13 peroxin-13 (Rhodosporidium toruloides IFO0880)
MTTATTAGSKLSALTLSISQYTSPYGAATTSPYGSAYSSPYSRYGSYGGGYGGMSSYGGG
YGGYGGLGGGLGGSMYGGYGGYGGGMYGGGYGMGGFPGAPGMFPGAEMSLSQRMEAGTAA
TFQVLQSLVGAVGGFAQMLESTFMATHSSFFAMIGVAEQFGHLRNYLGQVLSIFALLRWC
KSLLYRLVGKTPPGEAISAEGFRAFEASGGAAPGAPGSPAKPKLSKRPLAVFFLTVVGLP
WLMNRLVKLITARQEAEAARLAAAGQPPPQQQQPQFDAYGRPIPPAVAPAPVPLDPSQLT
FVRALYAYTPPTEASDKELAFAKDDIIAILSPPKEERDRAAKEAKAEGREDATWWMGRKR
DGKVGWFPSSYVRELPLNGTATAPKQVEDGVVGAKAVEAVKATA