Protein Info for mRNA_1677 in Rhodosporidium toruloides IFO0880

Name: 10045
Annotation: K15620 GOLPH3, GPP34 golgi phosphoprotein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 PF05719: GPP34" amino acids 80 to 306 (227 residues), 226.7 bits, see alignment E=1.6e-71

Best Hits

KEGG orthology group: None (inferred from 59% identity to cne:CNJ02330)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>mRNA_1677 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 (Rhodosporidium toruloides IFO0880)
MASTSGLSRRRGAAGAKPEGGALAPSSTQPSLSPSHSRPTSPLSAPGQPSNASPVGHKVA
YDERDLNNSEDERVNPRLTLMEEVLLLGLKDKQGYLSFWNDNISYTLRGCIVLELALRHR
IAMVRDPNRRRFPLADRYIEVIDDKLTGEVLLDEALKMMKVSERMSVGTWIDLMSGETWN
VMKIGYQLKQVRERLAKGLVDKGVLRTEKRNFLLFDMATHPVSDPTFKDDVLRRTLSLLT
SRTAAVPTSNMYGEEVRYRTIRAVSMVCAAFAANVLENALVHLSYDQRENAFAKADELLA
DFSQWPFGAYGPSGIAGGGMGGGVAGGAVGSKTSGTRPGGIATGGSAASAESANLAEIMR
LARLETVGQGTGDSPGGAEKQTQRELCLEVVAACVEVFRRMDSLL