Protein Info for mRNA_1678 in Rhodosporidium toruloides IFO0880

Name: 10046
Annotation: K09498 CCT6 T-complex protein 1 subunit zeta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 TIGR02347: T-complex protein 1, zeta subunit" amino acids 4 to 559 (556 residues), 814.8 bits, see alignment E=1.5e-249 PF00118: Cpn60_TCP1" amino acids 31 to 554 (524 residues), 531.9 bits, see alignment E=7.5e-164

Best Hits

KEGG orthology group: K09498, T-complex protein 1 subunit zeta (inferred from 73% identity to scm:SCHCODRAFT_78156)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>mRNA_1678 K09498 CCT6 T-complex protein 1 subunit zeta (Rhodosporidium toruloides IFO0880)
MSSALELLNPRADLARREQAFQLNCTGALGLANVVKSNLGPRGTLKMLVDGSGQLKMTKD
GKVLLSEMQIQNPTAALIARTAVAQDEMTGDGTTSVVLLVGELLNQSLRYTSEGVHPRVL
ADGFEVAKNALTSFLDSFKVPLASSSSTPATPSHETLVQVAYTSLATKVHKSLAQSLAQA
VVDAVLAIRQPSTVPGKEGQFEPVDLHMVELMKMQHMTDSDTRLVKGLVLDHGPRHPDMP
KRLENCFILTLNVSLEYEKTEVNSGFFYSSAEQREKLVESERRFTDAKVRKIIELKRLVC
DQKLDAEGNAVGEVKNFVVINQKGIDPLSLDMLAKQGIMALRRAKRRNMERLQLVCGGTA
QNSVDDLTPDVLGHAGLVYEHTLGEEKFTFVEEVKEPKSVTMLVKGPNAHTISQISDAIR
DGLRAVKNALEDSSLIPGAGAFEIAAHRHLVEDVKKNEAKGRAKLGVQAFADALLVIPKT
LAVNAGLDVQDAIVALQDEAADGHIVGLDLATGEPLDPVTEGVWDNYRVKRHMIHSAAVI
ASNLLITDEMMRAGRSSLKGNDEPSGPQ