Protein Info for mRNA_1681 in Rhodosporidium toruloides IFO0880

Name: 10049
Annotation: K03126 TAF12 transcription initiation factor TFIID subunit 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF03847: TFIID_20kDa" amino acids 51 to 118 (68 residues), 101.4 bits, see alignment E=3.1e-33 PF00808: CBFD_NFYB_HMF" amino acids 55 to 109 (55 residues), 22.7 bits, see alignment E=1e-08

Best Hits

KEGG orthology group: K03126, transcription initiation factor TFIID subunit 12 (inferred from 40% identity to cfa:612995)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>mRNA_1681 K03126 TAF12 transcription initiation factor TFIID subunit 12 (Rhodosporidium toruloides IFO0880)
MANNPSISTPAITRPPTAGSDAFGGASGVGKIEALPNKDLRPDDSQGRTVSKRKIREMVE
SIDPEERLSDEVEDLLLEICDEFIDSVTRFGCQLARHRKSDRLEVKDLALHLERSYNIRV
PGFMPEETRQSGARRVNLPPGHAARLAAIRESGRKR