Protein Info for mRNA_1691 in Rhodosporidium toruloides IFO0880

Name: 10059
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 transmembrane" amino acids 43 to 64 (22 residues), see Phobius details amino acids 70 to 94 (25 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 401 to 423 (23 residues), see Phobius details amino acids 448 to 469 (22 residues), see Phobius details amino acids 481 to 501 (21 residues), see Phobius details PF00324: AA_permease" amino acids 42 to 499 (458 residues), 422.6 bits, see alignment E=2e-130 PF13520: AA_permease_2" amino acids 43 to 464 (422 residues), 139.5 bits, see alignment E=1.5e-44

Best Hits

Swiss-Prot: 43% identical to PUTX_EMENI: Proline-specific permease (prnB) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 63% identity to cci:CC1G_03688)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>mRNA_1691 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MSHLEETYSKNDLEKADNNVVTLSNGDGHNGQDLHRGLKGRHVQMISIGGVIGTGLFLGT
ANALRHGGPAGLLIGYAAIGAMCYAVMISLGEMIAHLPVPGGHITLSRRFVSPAFSFAMG
WNYWYNWTIVLPAELNAAAVLIGYWDKKTNPAVWIAVCLVVACAINFGGSRAYGEAEFWF
AIIKVLTIIGLIILGIVIDCGGGPNGDYIGTKYWRDPGAFVQYAGIPGAKGRFLGTWAVL
IQASFSYIGTEIVAIAAGETKDPRKTLPRAIKNVYIRILLFYILGVFITGLVVPSNDPRL
NLGTGTAASAPFVIAIQNAGIKALPSIINACLLTSAWSAASSDLYTSSRALYGLALNGQA
PAILKKTNRWGLPWVCVLVGVAFSLLSFMSAGSTSAGTVFGYFANMTSVCGLITWAGICL
TYIRFHRGLRAQGIDRTLLPYKSPMQPFAAYFGLIFACIVLFFNGWSVFLKANYPFDTST
FVTSYFPIWFFPCLMIFYRLWKRSDRGPSPSEMDLVSGSRDEQGFADPEKPEPKGVGRRV
LAYVL