Protein Info for mRNA_1693 in Rhodosporidium toruloides IFO0880

Name: 10061
Annotation: HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 transmembrane" amino acids 71 to 89 (19 residues), see Phobius details PF00646: F-box" amino acids 66 to 100 (35 residues), 27.5 bits, see alignment (E = 2.3e-10) PF12937: F-box-like" amino acids 67 to 111 (45 residues), 26 bits, see alignment 6.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (695 amino acids)

>mRNA_1693 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MAETTGRAPDQPTPRATPAYQLAPVFTKKEKPVCPPFEPGDRRWVEDWYWDFDNPDEEEN
DGVDRLSALPVEVLIMIISHLTPGSLLAISRTSRLFRSLTSPIRDETIWREARRRNGWRD
LEAGGMNEVQHAKLVEGRICFVCSTEVEAWETCRRDFSLRTVLCRPCALRLIKEGDAIST
EFWHLHPQTFSCCLSTRKKPDGSDVPDGQDSLFYTPDVTKQAALLYDKEANALARNESPQ
SASLAHVSRRTKFKGRVRRDAAKMVANEKSLAQARGVEAERRRRMRRETITEKMVSLGWE
EEDFCCDCGNLACAASWCLQCFEDDFDDDIDDWESSSDERGELSELAALLPEDEELRDAR
IVAKIKAKFHTDCTPAPFEYAENFLYDDRRLGYEEWEACKDPLIEYAARNEHERLWREEQ
EGQKYRQDELKPLFERLKGVVASARQGVFLSLATFYDLSSVKTLWQDEDAYDDPEAWVSA
EPTILRDLFDHIHRGKVRLFDRIARAHLNDGIALPSFVKTVLECEHGACVDGEPSKGLAP
LHAVLTDSDMDPILSRLTSLFRCGICSAKRSYPAIAIHLVDEHSVTNVPAYANIPSEAFR
QVTKGLLDDFGLSHDISFAAFEKAHGDARFDVTTRTSSGETETSVGETWAHVLSGKSPAE
LEAGRRKLSASTDRNILKIRLSVVHSEQAADSSPI