Protein Info for mRNA_1699 in Rhodosporidium toruloides IFO0880

Name: 10067
Annotation: K10751 CHAF1B chromatin assembly factor 1 subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 PF00400: WD40" amino acids 115 to 149 (35 residues), 30.5 bits, see alignment (E = 9.5e-11) amino acids 191 to 224 (34 residues), 18.6 bits, see alignment (E = 5.7e-07) PF07676: PD40" amino acids 734 to 752 (19 residues), 12.9 bits, see alignment (E = 1.8e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (880 amino acids)

>mRNA_1699 K10751 CHAF1B chromatin assembly factor 1 subunit B (Rhodosporidium toruloides IFO0880)
MKCKTLEIRWHDKTPIFSADFHPLPPSPASVASKPSARTNAAALDLSDDDRRDRDKRWRL
ATCGADNNVRIWLVTPRPLPQAASLSLPLAPSSSSSAAKPTPKSNPNPDPSVEYLATLSQ
HQGVVNCVRWSPKGDMLASAGDDGNILLWVPSDPSSSTTGTGVPMNKAQTFGETDEDRAY
EKESWRVRAMIRSFTGKEIYDLAWSPSGDRLLAGSVDHTATLYDLTSLSPLARIAEHTNY
VQGVAWDPLGRYVATQSSDRSMRVYEIREKEGAVDARPVGRNSRMDVERQVGAGAGAAGG
RERSRSASRPASSAAGKKAETSTAPEFVAPQPRPPMHQRTTSSRSIDSDRSEASSSAISV
LSTPLSIATTVATTAAPTAAAKADGGEEVTTPMDPPNGIPHHPPPPHPVPHRTSSSHSRR
SSTSGSQPSQSPRLGPSPANGPSARPLRSPSPAPLPAVMPALSPKLNPVGTSTSSSAGAA
HLPPLDATASTSASTSASTSSAAPVDTAEHSPMNFNEQVRYDSIKLYGDANSTPFFRRLA
WSTDGSLLLTPAGIWEDPYSVANAQASVKAGKSAAGGKKKDEAVGAGGSDAKPTVYIYSR
NNIARPPIAHLPGHKTTSIGIRFCPVLWELREDGGAQEDEVEEGGDEAPVQVKLGVDAEA
ADVPLVPASSSAKDKGKAKADDSDAPKPKPKSLFDLPYRMVYAVATLDSVYLYDTQQAGP
IAMFGNLHYAPFTDLTWSSDGQTLVISSQDGYCSIVAFSPGELGTPYHDQRAAHQHHHSH
SHSHASLPHATHSTASSPVKTVASEAPAPPPASSSASLPSLFARTAASQPAKHDREPEAP
REAGSSKDVQGEGAGEAKGEGEPPAKKQKKRVAPTLIKPL