Protein Info for mRNA_1715 in Rhodosporidium toruloides IFO0880

Name: 10083
Annotation: K18328 DBR1 lariat debranching enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 PF00149: Metallophos" amino acids 14 to 250 (237 residues), 41.8 bits, see alignment E=1.8e-14 PF05011: DBR1" amino acids 380 to 534 (155 residues), 124 bits, see alignment E=6.5e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>mRNA_1715 K18328 DBR1 lariat debranching enzyme (Rhodosporidium toruloides IFO0880)
MSAPPSSTSSQRSLRVAVIGCSHGTLDDIYASVERCDEEARKKGEKEVDLVICCGDFQAM
RNTADLQTMACPVKYRALGHFHQYYSGQKTAPKLTIVIGGNHEASGYMWELYHGGWLAPD
IYFLGFAGSLLVDGWLRIAGASGIWKSGDWKKGHFETVPFDDRTIRSIYHIREYDVARLL
QLKNRGSSMDVFLSHDWPLGIEQHGDVDWLMREKPFFRDEINSNSLGSPPLHALLTSLQP
RYWFSAHLHVKFAALFHHDGSKTVVQNWEKRGWGGQPAAVVAQEGQEGAKAENPDEIKMD
DEEDGAGEGEAVVSAEGPMSEEKGCPSGCAAHDEPTSAAANPDEIALDDDEELEAAPALV
GEGNATVQPEPAQAANSMARTTKFLALNKPGKNRDFLQVLDIVEESSSTATLSAPSTSSA
NADSATSPPSSRPKLFFDPAWLAIVRSTAPYLSLSPRPIPFPPLAELAQTIEADEKWVKE
NVGKDGLVEVDEVMEFVRTAPTQEDWERNGMIQMPSWYTNPQTLAFTSLLQIENRINSIP
EGYLAALEADKKRALEEAKAEALREIEMAGERVDEEPVGEKASEVAAKEANGDAANPEEI
AIDDDDD