Protein Info for mRNA_1722 in Rhodosporidium toruloides IFO0880

Name: 10090
Annotation: KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 transmembrane" amino acids 374 to 397 (24 residues), see Phobius details amino acids 409 to 430 (22 residues), see Phobius details amino acids 450 to 477 (28 residues), see Phobius details amino acids 483 to 500 (18 residues), see Phobius details amino acids 505 to 535 (31 residues), see Phobius details amino acids 615 to 637 (23 residues), see Phobius details PF00005: ABC_tran" amino acids 55 to 197 (143 residues), 85.3 bits, see alignment E=6.1e-28 PF01061: ABC2_membrane" amino acids 359 to 565 (207 residues), 101.4 bits, see alignment E=4.8e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>mRNA_1722 KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily (Rhodosporidium toruloides IFO0880)
MSDYPTHPRNEFGDATPARLESHLSSSPAPHIELRWQDLTVTAPKRDRPILASLKGSARS
GECLAVMGPSGAGKSTFLDAICQRTPRAKGLVTVNGSTDYSTRDLFSFVEQDDALLGVLT
VRETIAFAAYLALGPSYPNIDQHIDATLTSLGLSAIAGNRIGTPLQRGISGGQKRRVTIA
CSVVAKPRILVLDEPTSGLDSTSGREVVAFLQRLAREQGVLIICTIHQPNFETFALFDRL
LLLAGGQTMYDGRVDDLDNYLASVGSPTPAHVNPADHAIELVNTEFRSGDKGDDNYPPTG
DFASPAEHLQSRADLWSNYKAKNLAGSKSTSVEEFDAHALGRKRSTASQSFVTNMRKTIT
LSHRAALNYSRNILAYGIRLGMYCGMGLLLATVWIRLGWTTDKLNDRLSVSFFSVAFLGF
MSVAGIPSFLEERAVFIRERANGLYSPAQYLLATTLVSLPFLFVCAAAFTLIIYWAIGMN
PGATHFFRFLLYLYLGLVAAESQSLLVAAAIPIFVAALAIAAFANGLWMCVQGYFIRATS
LPKFWYYWAHFIDYETFAFELLVRNDFVGRILTCPKGPNASCLCPIPSSLTPGQCAVSGE
DVIQNLGYGGVSDGLYVGILIIIIVVYRLLMWGVLVWRKR