Protein Info for mRNA_1723 in Rhodosporidium toruloides IFO0880

Name: 10091
Annotation: KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 855 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF09362: DUF1996" amino acids 35 to 266 (232 residues), 272.7 bits, see alignment E=3.8e-85 PF01822: WSC" amino acids 380 to 459 (80 residues), 50.8 bits, see alignment E=1.5e-17 amino acids 612 to 693 (82 residues), 45 bits, see alignment E=1e-15 amino acids 724 to 805 (82 residues), 47.1 bits, see alignment E=2.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (855 amino acids)

>mRNA_1723 KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain (Rhodosporidium toruloides IFO0880)
MFAQIAVGTLLAAAGSVEAFWRLPCGNSLVVERGDTIVSPGSVSGHVHNILGGSNFGLDT
TFDSLRQSACTSCLVKQDMSNYWTPQLYFQWANGSFTDVNVVGGGLIYYLPRNNAADTTN
VTAFPDGLRMLTGNPFKRSYDGSPTAQAIGWNCLGSNLPATRNPWLPNVNCPNGLRGEVR
FPSCWNGVDLDSSDHFSHMAYPIGGETGPCPAGYPVRLVTLFYEIMYDVDSWKDLWPQAM
NTSQPFVLAMGDSTGYGFHGDFYNGWDRTVLQTAIDTCTSDSGIIEYCTVFDLYDSNHEC
RKTPDFDEIVLGTLPSLPGCNPVTGEGPAATPCSDPTSPPVFSNPVAYNGSAPAPGSPVL
SNDPQVVPSYVSSSSSNWTYQGCYSDLAPGRVLPNGLTTVNKTVESCIEACDKRGYVFCG
VEYHGECWGGNVLSPNSTDQGYGACGLTCTDNPLQYCGGTGGVTGATFELYTRPAPPKST
STSASKTSTSQVSPTAVSANSTAPLSSASASITTWYNANPSASVSANSSTALSTSSHASS
AVSSAASSSTVSFTASSLASSSVSVSVISSSPIPSAVSSNVVASSTASSTVSSASPTASA
STKLLTNPNWKYSGCWSDLVNGGRSLPSTLTGSSNFTIESCLAAADAQGFAIAGLSYMGE
CYAAPALGLYSTQLDASKCTMTCRNAGNETCGGSDALDVYTSTQRQAVTGPTNAQLETFG
QWTYDACYSDLVNNQRSLPTQITNANQTVEACLDACTDKGATVCGLSYYHECWMTTTNIS
SASTVLADTSCRFPCAGNPLEMCGGSGALSVWRLTPATINAKIVAPASAGSTTLASAAAT
ASSRRTMRKTSKRRP