Protein Info for mRNA_1727 in Rhodosporidium toruloides IFO0880

Name: 10095
Annotation: K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 transmembrane" amino acids 128 to 152 (25 residues), see Phobius details amino acids 563 to 582 (20 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 54 to 286 (233 residues), 52.5 bits, see alignment E=1.2e-17 PF13579: Glyco_trans_4_4" amino acids 54 to 275 (222 residues), 31.8 bits, see alignment E=3.8e-11 PF00534: Glycos_transf_1" amino acids 299 to 379 (81 residues), 42.7 bits, see alignment E=9.3e-15 amino acids 418 to 524 (107 residues), 49.1 bits, see alignment E=9.7e-17 PF13692: Glyco_trans_1_4" amino acids 306 to 509 (204 residues), 41.3 bits, see alignment E=4.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (592 amino acids)

>mRNA_1727 K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase (Rhodosporidium toruloides IFO0880)
MRAALCQPPPRSEHRLSDTMQSQQAPPMHPDDYPDIHLPSHLRIAFIHPDLGLGGAERLV
VDAAVALQKRGHDVEIFTSYHEDGEKGRSFEETRNGTLKVHVLGNSIFPPSILGKFTIVC
TMLRQFHLVFSFLLACLLFHLSNIPLLSLFLAPTDKPFKSSSDWSIRRQLEPFDVIVMDQ
LSTCIPILRWFGQSRVVFYCHFPDLLLASGPHGTSTPHDPRSGRPFSFGNELRSFYRIPI
DLLEEETTGQADKILVNSEFTAQVFARTFQNLRRIPRVVYPAVDVSQYGGEVQVEEKDKW
MLSDKPTLISINRFEGKKDIALAVEAFAKSRATHPNLRLICAGGYDPRLGDNVKTLSSLQ
QLAAKLELSQHTYSASELPRVASPVPPRFRPTIANTPPSSDAAFPDIVFLLNATSSQKSL
LLSASHTGTVALLYTPMFEHFGIVPIEAMASGIPVVATETGGPTETVIDKGLPSPDEGDL
AESDPRRETTGLLRPRDPAAWSDALSSLLALTPSQRATISSAGRERVKTAFGTDRLGEEL
ERACRDAAKRGYPIPYELGYKKMLAFFGIGAFVGGFGVWAFVTGGVPETAAS