Protein Info for mRNA_1735 in Rhodosporidium toruloides IFO0880

Name: 10103
Annotation: K03235 EF3, TEF3 elongation factor 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00005: ABC_tran" amino acids 481 to 609 (129 residues), 63.3 bits, see alignment E=1.3e-20 amino acids 724 to 955 (232 residues), 78.1 bits, see alignment E=3.4e-25 PF13304: AAA_21" amino acids 737 to 982 (246 residues), 29.8 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: K03235, elongation factor 3 (inferred from 67% identity to cnb:CNBD3940)

Predicted SEED Role

"Translation elongation factor 3" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1073 amino acids)

>mRNA_1735 K03235 EF3, TEF3 elongation factor 3 (Rhodosporidium toruloides IFO0880)
MPSAAMSAPAAPKISADDIKLDHGKAPSTSDAKVDVATILSAGADRAARVDAAKELVDLV
KLEGPHAFVNVGLADAILKGLGDKKNAGVREAACDLLQILAEQGVGNAVEPFFYEKLMKT
IVAETFADKEKVVREAAVQAVKSIVQVSTSWSVPIFLPILLEQIKTAGKWQVKTGSLQII
DQLVVSAPEQCARLMPDIIPVMVDAIWDTKADVKKAARASLTSLCNLVTNKDIEKFVPAL
INCLINPVEETPKTVQLLAATTFVQEVDSPTLALMAPLLSRGLTEKLTATVRKVAVIIDN
MTKLVDNEHTIRPFIPKLLPGLIKVENTVGDPEARGVVVKAIKTLRDTAKCSGDGSDLPP
PKVSTAAQTAGPLVAAIKKVDSASKLDASSPLIHYIATLIGNLATARNWESTEWESALTP
YIALALPASIRANSAIEVARDVLQQLAKDEGEEVEAFPDEEEGEDLCNCTFSLAYGAKIL
LNTATLRLKRGHRYGLCGRNGSGKSTLMRAIDNGQVEGFPSPDEVRTFYVEHDVDGDETE
NSIVSFVLKDKRILKSEDECRSVLESVGFTRERQEAAIGSLSGGWKMKLALARAILFEAD
ILLLDEPTNHLDVLNVAWLENYLCSLKTCTSIIVSHDSGFLNNVCTDILHLNKFKVKRYP
GNLDAFVKFVPEAKAYYELNPLEDYNFKFPNPPLLDGVKTKEKSLMKMRHVGFQYPTSPV
QQLYDISLQVSLSSRVAVLGPNGSGKSTLVKLLVAETEPNKGGEVWKHPNLVIGYVAQHA
FHHIDHHLDKTPLQYMLHRYQTGEDLEEMQKANRQLSEEEEKKMKEGATVVVEGVKRTID
EIVARKKLKQSFEYEVTFKGLSSSENIWLPRDELIRRGFEKKVLEVDSREAQKAGLLRPL
VRKEIESHFMDFGLEPEFTTHNTMRGLSGGQKVKVVLAAATWRRPHVVILDEPTNYLDRE
SLAALISALKTFEGGVLVITHNREFSESICTEVWAMRDGHLTASGHNWVEGQGSGPRIDQ
KNEEEEDVFDAMGNKIDAPKKAKKITSKDARKLKKERMARKKLGLPSDDEGDF