Protein Info for mRNA_1743 in Rhodosporidium toruloides IFO0880

Name: 10111
Annotation: HMMPfam-Protein of unknown function DUF262-PF03235

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1155 PF03235: DUF262" amino acids 140 to 292 (153 residues), 33.6 bits, see alignment E=2.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1155 amino acids)

>mRNA_1743 HMMPfam-Protein of unknown function DUF262-PF03235 (Rhodosporidium toruloides IFO0880)
MDDDDSTSETSYSQHTPRHAHPHSARPLFNEQTLALSHATTPSYSADQQQPVASTSAQPY
TAAMNGFAADLYGDEEDELDELQSATEDEDEDSSDEDALAEQQLRAVQAKKMEAVKGLYK
GERVLPEEEFGSKTVREIYDMLKEGVINLSPDYQREAVWPETHSAGLIESLLRNMHVPEL
LFNIYTPVPSDKRYKLVHPDAQIDPENKAKLPAGWKGESDSDDESELEEDVDANGRGKGK
KVPRKVWNCADGKQRMTAIKSFIEGKFAAIDQKKKKFTYSTMEPQARQVFDSKRLRYGFY
RELSDAQEREIFKRVQLGKALDKGEIMNAITSPYALWIHQLRQKYFSADDPHSFRPRVLS
SKRGKVLTAAYVMSRNLMLDFDSLAQESEAKRTKNMQELPVPSERQIKAVERAIERFKKL
TLVKALPGEDAWPNTSTYQDLRDKNVPVPHRVWRLRASDVDVERTKAVSTIAFAPVEIHL
LPAVVQKFVEDDDLSDGELLEVVHRLRIHVHESFPGEVKDNSKTYQLVKAWVKNFDTSTL
EHWYNDDGSLRKSYDPSNAARRKKGAAAAPKPANGTGANGSSAQAKGKKRAITIGDSDED
ENDEPAQVQKKKKKDKGKEKDKGDRVQRSASGDPLPFSSTAANLQPGARPQPVVFGDTAS
STNGSAANTPAFGRAGAGTPAQHRAASVAQPQATPAPPAGYSAKHAKFAPRAGLLPTGGV
APSPVSAASTSNGTRAPSPAPPGKRQPPPPPRPLRFDDRGRAIYPQTAGPTASAAPVEDE
PMDERAWGAVDFEQEEFQRVMREKEAAHRAQQQQQAQTQRLYGNALAPPAPLGPTYSSYD
TSSQYSAFASITPAPTASISASHPEIKPDPEVLERRESSSLASLSPTTARVNPDQAQHDS
EVFAVLQGKRSSSKETSMRPPPAPTSDRDRQRERSYAGEDRRRNSDRRDDRRDDRRDDRR
DDRRDDRRIDRDDSYRRDEGYRRDDGYRRDERESSYRREDQPRRDYRDDSRYDRSSSRDS
SAAAPPHSQSRVPVNYRREASQGPPARQNSGDGYGGAGPSSTSYAGPPANGYTAPFSNGY
GGSSSNGYGAPSTSYSNGFHSPPPASYPNGSHAPPPASHSGSNVANAYGARGAPLPDQDA
LRPPAMERTTDSRRR