Protein Info for mRNA_1745 in Rhodosporidium toruloides IFO0880

Name: 10113
Annotation: K09829 ERG2 C-8 sterol isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04622: ERG2_Sigma1R" amino acids 11 to 224 (214 residues), 318.8 bits, see alignment E=6.5e-100

Best Hits

KEGG orthology group: K09829, C-8 sterol isomerase [EC: 5.-.-.-] (inferred from 64% identity to lbc:LACBIDRAFT_294931)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (225 amino acids)

>mRNA_1745 K09829 ERG2 C-8 sterol isomerase (Rhodosporidium toruloides IFO0880)
MRNLVVAGLALGLLSALVGVLESVKSRWYIFDPPTLHKLCKESLALHGNDTVSVVSHIIT
SLQQTHPSFAINTHIIPSSYTPNDREWVWNNAGGAMGAMFIIHASITEYLIVFGTPLGTE
GHTGRHTADDYFHILAGEQWAAKAGSFEMERYVAGDVHHLVRGEVKQYKFHEGGFALELA
QGWIPLMLPFGFADTFFSTLDIPTLYNTVRVTGREMIKNLLHGKI