Protein Info for mRNA_1759 in Rhodosporidium toruloides IFO0880

Name: 10127
Annotation: K13345 PEX12, PAF3 peroxin-12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 193 to 214 (22 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details PF04757: Pex2_Pex12" amino acids 23 to 305 (283 residues), 149 bits, see alignment E=8.2e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_1759 K13345 PEX12, PAF3 peroxin-12 (Rhodosporidium toruloides IFO0880)
MEYLGPGQAQDPYRPSIFELAAQDQLRDLLSPVVRYVLSVFAQRNPRYLLRIVNHHDSLF
ALCMYFVERHYLVTHGGSFAETFYGLKRRKVLGSGRGGPGEEKTKAAFELTGKSDRLGRK
EVAGSLAFLVLMPYLKTKANDLYERLGGGVDADLFSSPAAPISSPLALLRNASLNPSLLT
RLKLSSQALFKLSYPYVNLLWELYLLVYNLRYLFGKSPYWRPWFRLLGIEVRRMGQEDYE
RLNSIQTPLQKLFAAPHGAPPTTRPSIRLFLSRLIRLSPSLALDSLRLLLPLSIFGFRLL
EWWYSPTGGAGRLGRGSKKGSQPALRAPPLPPSSASADSDERGKCVVHGGPVENPTALPS
GWIGCYKCLRGLEEEVEDPVAGGAKRGTGRLRDPKTGEWVDVGRLRRIMG