Protein Info for mRNA_1760 in Rhodosporidium toruloides IFO0880

Name: 10128
Annotation: KOG0940 Ubiquitin protein ligase RSP5/NEDD4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 882 PF00397: WW" amino acids 330 to 359 (30 residues), 37.8 bits, see alignment (E = 1.7e-13) amino acids 459 to 487 (29 residues), 42.5 bits, see alignment (E = 5.7e-15) PF00632: HECT" amino acids 576 to 881 (306 residues), 305.4 bits, see alignment E=5.6e-95

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (882 amino acids)

>mRNA_1760 KOG0940 Ubiquitin protein ligase RSP5/NEDD4 (Rhodosporidium toruloides IFO0880)
MHGAGGLAESADGQTGSSRLVRRFKITVNAADDLIKREVFQLPSPFPLLLLYSASTRPTT
SAQPFETYEGPIAQSTISPYWGNKASWDIEVEKGTWARIRVHDRSKWNKRGQGYLGEVTL
GNLWELLPETQAGELTLTRELEKGAGNVAVSGSLVLLLEAFGAPYSVLVQPNDSPVSAVV
PVGAAQSTPVSALPASSSGFAQPSLHPPSHLSAPVHPAYPAVMPSVHVTHPTPPVASSAR
PRSFAQPRPFPLASTLNADAAAASATTVHRRMTLAEHRRGAAAVSAVDEALGTDLATPTP
SSEVLVDPLAQLSVSTSARPVSQVDPLGPLPEGWEARTAPNGKTYFVDHRERKTTWHDPR
KAAQRARARAEREARRQAAMAAVAAAAGEGAVVAGSGELSATATPSTAAPTSEQTPTPSA
ASSSTPAVSSAAATNAESPTSPADNAALEVSDEQLGPIPSGWERRTTPSGRAYFVDHNTK
TTTWDDPRIPSLNPESDKGKRDFRRKLVYFRSQPALRPPPATGGCRLIVRRAHLFEDAFG
EVMKYSPEDLKKRLMVTFKGEEGVDFGGVSREFFFLLSHAVFDPSYCLFEPTEKTSYTLQ
INPNSGINPEHLDYFTFVGRAVGMAIFHRRFLDAHFATSIYKACLDRPIGLEDMATIDAQ
LWQSLTWMAENDITDVLDLDFTSQYESFGTLETCELMPDGANIPVTEENKHEYIRLLCEH
RLKGRVEAQLEALKRGLGEIVPLKELRVFDEKELELLIGGVETIDVQDWENHTDYRGYSS
SDQVVRWFWQAVKSWPAEKRSRLLQFTTGTSRTPPNGFRDLQGSDGPRRFTIEKAVGGGQ
GALPKSHTCFNRIDLPPYESLETLESKLLFALEEGASGFHVE