Protein Info for mRNA_1781 in Rhodosporidium toruloides IFO0880

Name: 10149
Annotation: K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 235 to 259 (25 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details PF00153: Mito_carr" amino acids 66 to 145 (80 residues), 54.7 bits, see alignment E=4e-19 amino acids 177 to 267 (91 residues), 60 bits, see alignment E=8.8e-21 amino acids 275 to 361 (87 residues), 56.2 bits, see alignment E=1.4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>mRNA_1781 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 (Rhodosporidium toruloides IFO0880)
MATSTTSDPLPSRTLPSHSAYPSDASPAAPFVRHDAYEAAQTSKGEVVREDLKGKGKGKE
RAIDLRGFAAGTASGMTKLVVGHPFDVIKVRLQCSPPGTYGGPWECLKTTIRAEGPRALY
KGATPPAIGWTLSDSMLMGSLHQYRLLIARFESGWRSGWRDDGAGLGKDGLSKGLQLSLG
GHFVAGLLAGQTVCVVACPTEHLKARLQMQTTGPRLYTGPIDCAKKIVDVRGVRGLWHGF
GATLMFRSWMGMMFFSYEVILRAFRKHVPDMKPGTANFLAGGLASNTFWMGSFPFDAVKN
RLMTDSLTNPRYPTWMSCARQIYAEGGAKAFYRGFVPCILRAFPTNASALLVWESTMRFI
SAEKLATSD