Protein Info for mRNA_1789 in Rhodosporidium toruloides IFO0880

Name: 10157
Annotation: K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF00179: UQ_con" amino acids 8 to 144 (137 residues), 169.8 bits, see alignment E=1.4e-54

Best Hits

Swiss-Prot: 88% identical to UBC2_USTMA: Ubiquitin-conjugating enzyme E2 2 (UBC2) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K10573, ubiquitin-conjugating enzyme E2 A [EC: 6.3.2.19] (inferred from 88% identity to scm:SCHCODRAFT_17452)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 6.3.2.19

Use Curated BLAST to search for 6.3.2.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>mRNA_1789 K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A (Rhodosporidium toruloides IFO0880)
MSTASRRRLVRDFKRLSTDPPGGISGAPCPDNIMVWNAVIFGPADTPFEDGTFRLVLTFD
ESYPNKPPVVKFISKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNS
PANAEAAQLYRDNNKEYVKRVRETVEQSWVDEDIPA