Protein Info for mRNA_1799 in Rhodosporidium toruloides IFO0880

Name: 10167
Annotation: KOG2489 Transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 transmembrane" amino acids 372 to 392 (21 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 433 to 452 (20 residues), see Phobius details amino acids 496 to 517 (22 residues), see Phobius details amino acids 526 to 548 (23 residues), see Phobius details amino acids 565 to 585 (21 residues), see Phobius details amino acids 596 to 614 (19 residues), see Phobius details PF05602: CLPTM1" amino acids 39 to 517 (479 residues), 449.5 bits, see alignment E=7.1e-139

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (664 amino acids)

>mRNA_1799 KOG2489 Transmembrane protein (Rhodosporidium toruloides IFO0880)
MRRASARPGPAARGDRGQRAAAAQPGQDNAGGGGAFSGILKQAAFAYLTSRLVSYLFTGK
STFSPPPPPATVSTPDTQSTGPASPANSAPSSSSSPPASQQEPPLHPLWPPKTLLDFHLT
LSPESDPSNVNPLDSRFPSITWEGIELGRASKWSRVWETEWDVPESVQHNGSFFLDAFVA
RAGSDLVKDAEEGQVLHVRKALTRYYPQKRVKVVKNLLSGEPANSAEKEDEPEAEETEEE
RKARPIVSFYHPNVTLELVTESGPLAYATLPPPVKQHVHIARNGQRTFDSKQTYFPIVYP
NDFWLLSSHMFPLNTSTTRVPLRVELKPTSHFKFQMLSTMDDAFTKQSAATGGGRGELDE
IKRILIETNPTLLITTVVVSVLHMLFEFLAFTSDVKHWRGKKELVGVSVRTILTNVFVQL
VVLLYLVDQSEETNYMIIASSGIGVAIEAWKITKAVDIRIRPNPARPLFPYSLEVKDKHV
LTEDELKTQEYDRLAFKWVAWGTTPFLIGWTIYSLLYQPHKSWYSFTVQTMYSFVGAFGF
VQLVPQLIINYKLRSVAHIPMKAMGYKVLSTVIDDFFAFIIKMPILHRLACFRDDLVFLI
LLYQALMHLWYVRVQMWIYRVDPNRENEYGQKLTEDEAKKLLEQQAKKERERVGGEKGES
KKTQ