Protein Info for mRNA_1800 in Rhodosporidium toruloides IFO0880

Name: 10168
Annotation: KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 PF00106: adh_short" amino acids 19 to 126 (108 residues), 53.4 bits, see alignment E=2.4e-18 PF13561: adh_short_C2" amino acids 27 to 141 (115 residues), 40.6 bits, see alignment E=2.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (318 amino acids)

>mRNA_1800 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (Rhodosporidium toruloides IFO0880)
MPSSTDARNANIALNLEGKTAVVAGGTQGIGAAIGLRFAQAGANVFIIGRNEKLGQDVVQ
RLREQAGEAGDRRSFEFIKADLSSVKEIKRVADEVKRKTGRNGLDYLVTTQGGPPNGSTS
LTSTTPTHDTHFAIQTLSRFGLAYLLASSGTLKDTWISVCAPAGEKGPEPDVEDIELRGE
EYRKKWTVQRILGQAKQDSALNDAAAVQFTRHFPQLRAVHLFPGFVYTNALASTGMVPSP
LLWAYSLVGPLAARLLPFGNLPSTYAEIPVYVGANPEARGKGLEASNERLKSLGWPKWAE
GEVGSRVWERLREIIEKE