Protein Info for mRNA_1802 in Rhodosporidium toruloides IFO0880

Name: 10170
Annotation: K05546 GANAB alpha 1,3-glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1499 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF13802: Gal_mutarotas_2" amino acids 271 to 346 (76 residues), 76 bits, see alignment 5.8e-25 PF01055: Glyco_hydro_31" amino acids 394 to 844 (451 residues), 463.3 bits, see alignment E=2.8e-142 PF12999: PRKCSH-like" amino acids 1026 to 1130 (105 residues), 71.8 bits, see alignment 1.7e-23 PF13015: PRKCSH_1" amino acids 1353 to 1482 (130 residues), 109.6 bits, see alignment E=3e-35 PF07915: PRKCSH" amino acids 1378 to 1440 (63 residues), 36.9 bits, see alignment (E = 1.5e-12)

Best Hits

Predicted SEED Role

"Maltodextrin glucosidase (EC 3.2.1.20)" in subsystem Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1499 amino acids)

>mRNA_1802 K05546 GANAB alpha 1,3-glucosidase (Rhodosporidium toruloides IFO0880)
MERRAARSRGRTAPGWLSPALWFAAALLVIQSLPTSTAVKRHDFKTCDQSGFCRRNRALA
DRAGEAGASWQSPYEVHAPEFSGGSFRAAVSNALFPQIKFSLELRFQKDGTARVLMDEVD
GLRQRYNEAAKWTLVGEPAVEENEARYEANVKKTFATIKYNGGQNEARIDYKPLTITFFR
DGQPHIVLNERKLFNMEHFRVKTVGNQPEELVVEDPEHPDEQLVVVQNEAFPGFLPPTED
GMWEETFNGKTDSKPKGPESLSLDITFPGYEHVYGIPEHASTLNLKETRGGEGVYTDPYR
LYNLDVFEYEADSEMALYGSIPFMQAQRAGSSVGVLFVTGSELWVDVTRSPTSKGVTSAF
KKGKKAKGGAEDGGPAARTTSTHWMAESGILDLFVFLGPTPADVFDAYTSLTGRAPLPQL
FGLGYQQSRWQYWDERSVLEVQSKFDEADIPLESITLDVDFTPDKRYFLWEPHNFPTPEK
MQEKLAERGRKLITIVDPHIKRDPDYYIYKEAQELDILVKQPDGKSEFEGWCWPGSSSWT
DWFNPKSHDWWIKQFRYDKYKGSTPNLFIWNDMNEPSIFNGPEITMQKDAVHHGGWEHRD
VHNIVGMIYHNLSMQGVIEREDPPRRPFVLTRAYFAGSQRYGAMWTGDNMGDWPHLASTV
PMLLSNNIAGMPFTGSDVGGFFGNPPPEMMTRWHQIGAFSPFFRAHGHIDTKRREVYLFD
QPYQGIMRDAIRLRYSLLPVFYTAFYETSKTGIPIMRPQYVVFPQDPKGFALDDQFYIGS
SGLLVKPVAEEGATSQDVYISDDQPYYHYLTHEIYFGASHGGAHVKVPAPLESIPVLQRG
GHILPRRDIVRRAAVLSWRDPITLVIATDLAGTSATGSLYLDDGDTFDNEKGGYLYRSFV
LAPETKGSKTLKLQNRAAEAYDESNAYAQKISDVPVREIVVLGLPAKPSCVRVAGGAVGL
EFEWKDGVAATGSRRSSGKPASVLVIKDANSPIVKDWDLVFEFDSSKACPVTPAVDYEAA
LQSPECPVGRFRCRNEGHIPGCILLSRVNDGVCDEECCDGSDETDGKALCPNRCAAVNAE
YRKQKAEAERKQRVGASVRNDYIKFGTREKAKLEADLEKAKNEIADLQQREKFAKTALDI
LEQAEAGEIERKRNSQLYQRIVEMQTVIKALRLHRQNLEGHISDLSGILSDLSRDYNPNF
QDMAVLGATRAFRDWKVANGMAVEEGEGVESGQEGETAAPPAGKPTEEELVADDYSDDEL
KKLEEEDPLSLIDSVNLRVGAPVTSGVASIFRLDDYVPDKWRPLYDNYKKQLVDFLVRTG
VVFAPVSEGSDRPELMRARTAHTDLVDELHRAEGRLEDVKKQLEKDWGRDWEWRKLDGTC
IEKDAGEYTYSLCFFGEATQKSNNNGARTSLGTFKGWSSDAAQGSDEYYMKQLYADGQRC
WNGPARSAKVDLVCGTSNALISVVEPEKCEYLFQVTTPAVCYPPAAEAEEGAKGAKDEL