Protein Info for mRNA_1807 in Rhodosporidium toruloides IFO0880

Name: 10175
Annotation: K09403 FOXJ2_3 forkhead box protein J2/3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1337 PF00498: FHA" amino acids 370 to 428 (59 residues), 27.1 bits, see alignment (E = 4.3e-10) PF00250: Forkhead" amino acids 973 to 1058 (86 residues), 108.9 bits, see alignment 1.2e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1337 amino acids)

>mRNA_1807 K09403 FOXJ2_3 forkhead box protein J2/3 (Rhodosporidium toruloides IFO0880)
MLGSPSSAPAPALPSFFFADDADHRMTDDDYLPSWSKASTTSPHPAAIDAGGSGSTAAGP
STSSRSAKVKANGSGATQKDVGMGQSPVLSPTHFVGSDLDMAESSEALSHAIFGGNSASP
FASSFTKFQDRSPELAATRKSPRSRRKTLSNDSSAPLSFANVASLSVTSPADSPSVSKAG
SSIAGAQSGADRPRTASSKQHGSGTAEYAGALPEGLQKRSTSANGATGADEQRIQAFAKL
EFPSFDIYIQKLSVTIGRRPVTPRASNSAAAGPSVPLSLEEAQKAGISLEEYILNLDPSA
LSGVEPLATPASAKGKEKAVDDPLADFLVMSPPPQTTSAVANGASTSTSENSQTPSAPST
PHPDSSTFTDVDLGPLRAVSRQHARLYYDFDAGAWAIEVLGRNGVVVEGKWRANGQKVVL
TKKTRIQIAERIFHFVLPTIDVVTVEPNGAVEAMADSAQGEKKTVEVVRRKAKASTTGLK
AEHKVAQSPASGGDAVTVETRAKQAKPVPSTNPHAPESLSESTSASPALTQSNSTASAPG
STSLPPLPSIATQKPSPASSSRAKPATSSSKPPPPGKMPAGSPAPSPAPPSARPTPLPTP
TAASYRPVRSMAKKPPPPAPKAASPAARALSLGFSSRADSEEMDEASIEAARQRAAVIAQ
LLSGGAGPAASGKNSLVRAAAEAKRAGKGKAPMRMAGKGPGKGKGLMPPPRRPSDLGWSD
DEDDDPFASSDEDDSDEEDDGASPMDVEIVAAGQGGGKAVVKRSASVSTASASPAPPPVP
SKAPRKAGKMPAKQPRQRRDLPVASQPESTASPAPHPAEVSAQPSVPPALPSKLPALPSI
SPSPAADPPPALPALNLLPPLPPLKPSPSPAAPTASLPSAPAPATSQTVNKPASAVAAPT
AQKVKPSKKKGKMDESPAPAEAKKPESSSAANKANDVDATSPAKPRPSPYAPAPLPPGVP
PPDAAPADNRTAKPPYTYASLIAQAIDSSPAKKLTLHEIYDWVTDKWPYFLENQKGWQNS
IRHNLTPTRGFLKVVREKDDLSGKGSFWEIDPTQMSNFDGHHYRKKPDGPTGGTASNKAK
ADAAAKAAAAATAQITAAASQAPPSTSKTAKKPTPAKASAPSNAPLSKPLPVIVAPIPDS
YVRPSTPTDGSQPTDELTAALLADPPIVLHEGKLILNPTIFSSLSETELDELQRQPASAA
LQTLQAKVVQHFKDKMKNKSVHKFAAAAKAAASSSTGKPASSASPKTPASSLPSLPPLPT
KAPSASKASPAPKVVAAKAPRAGLVAAKAPRSAAASKASKAPKSASSASTGKRAREADID
LTATTASAKPAKVAKKK