Protein Info for mRNA_1834 in Rhodosporidium toruloides IFO0880

Name: 10202
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 58 to 83 (26 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>mRNA_1834 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MARRSHSKGDKISSHRKDSNLRHTLYVAAPFAAASSSFLLAFLTAWLQAQSKDLLPDYVT
MVCVTSAVLAVGAGIASIWAGYMLHKGTNYHDRHYDDDVDTIKHKHPFKAWHRMLVLGLH
AATFLSECCYLYMLISTSLVGDKKEYCVTLSQATSLADCDHPIYPVLILVLLVCITASMA
VLLFIATRSAKNDFRENAEEHARLQGVDLDDVERGRSKSRNRSKSRGRSANRSTSRARQR
DDYDDDDQDDDTDQDDGYDDTRKKRAGAAYW