Protein Info for mRNA_1843 in Rhodosporidium toruloides IFO0880

Name: 10211
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1852 transmembrane" amino acids 749 to 766 (18 residues), see Phobius details amino acids 969 to 983 (15 residues), see Phobius details amino acids 1040 to 1058 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1852 amino acids)

>mRNA_1843 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MLDQLDTAFRPQRAGSNGAAYTLDTSKSAPTIPATSFASTAPIPPFASSSPRSLAFPPND
RSAKTSVLRPSPRFALPSSSSSTSSFEAALTTRPPKLKRRVTFSPTPLASLQSSPKHKGR
YCSPLGAGGGAAGDEENAGVGGTFGRERKRPRLTRNVYSDNPLFEARRAVGRLAADEDAA
SSGSDVAAGGESSDPACSSSPARLATLLHPPARPVANRSVQMLRSPPRPPQLAVEVKSKR
TMPNAGDAVLPFRLPGLVIVEQPQEADDADAEGTDSEAESEVVSSLLLPTTSAAALNSSP
SLSSDTPSSSSPLRSPSQRLRPPTSSKPLVDRPILPLKPILKPFPQPLPSSLAKDEREGQ
RKNGRGRRHVVGWESEKRAKEKAEEVRERRKQLSESKKRKREAADAGEGAGGKGKERAAV
STSASAGSTASGSKTRARVTRSGKTSGGGSNGGGTGDDDQRRRKRPLPSGNGSGGAGAPS
QTPSPALDSIGTKRFAYAVAADDPILLTTPLLTLRSSLRPTEAFDSAYEGAAPALPPRPH
PDVPPFVENEGVAGVPVFPSPPTLLNDVEDAYVALKNALFQLPATFDATVTLAPLRTHAS
TLLGALTRDIGNIKTFPAWVKEQPVSQNGFGGMSSPFPSASEDIVSSPAGQPAPSSESSS
NGAMRTSLTESQMRRMRDEVAVAQAAIKCAAVILRDERLIEAFKAESLVSLVSLVASIPL
SPDILGMVQRDLFPFIPFLIQAQQLAPQLIQPLLVPIILPALRATLSMGPKIDRFRFAFC
ESLEALAKLLHTNAPDLLADDARGIWLRPATMGLWEVSRKGLSTREKTMQVLGRAVRAFT
MSLDEGAEAGEGETQRAVIREELASNFGADLLEILNDSPPDFSALPPDEEAKVTFRDILL
EQITTPPPVSENASPEQVAAVRDSHDLSKVAKLALMPALLQSSFRKFEKGGVGPWIRPYN
TLTSSTCAPVLALSALAWSNLIYAFTKTASGKTSASWIFRADQRPFGIIVNLFTARAVRW
SQSAQAASDPVKRQKAKLHAKALALAFASVVYGLTVHARHGTSSHRDEDAPVDGPLSAAR
LDHYSYTFSHLLEPHLSQMAESTVSTEVNSLSWSILANIVRPRTTADRHAVLETLVNPVF
LDLPISEISPDSPRMEHLLAVGMHRAVQPSQIPGWGAQWVTSNVERILKLFDRCLPAANE
IPPLVQDNMTLAWQSLVRNLLDSPKRLRATLNWLVQLTRSRPTIAGGFWAATVAHSEPVL
VEAVAKLASADSDVVEAATKAWLGLHEKPQPPAAALARAWTKILTAGDPADLSVHQLDSI
ISLLRYHLATEPATSDAVWLELARVVNVALWQKPRDSLCSHLSMLLSSPTDVGANLRLCA
LLVSASHSLHVDAQNNILALATHSVDVVLGTESATGENIELISGVLQAASDQTFPTLYEH
ILRHLAPLVQPTSEHLRHFAPLLTPSLERAYNLAVSDPESQAGLEASMAALEPSHPVIQP
LTSFYEFWRATFGRATGHLEIPADMVDSLQIMRRISTGFDVPGLADTQASSLGSIHPAAA
AEMPAAAQPTASTARQAARPPTTLTTPSAHRSAGYEADQSRFDVGGASNDTATDSTFTAS
SPRQGGGPSPSLHADREATDQAALNDDEVAETQVVEETPKAVDAMRARESIAALLSDAVM
TEHGSEASTIASESLGGPNERTKRAELVGETASSASASPAQPGPSRSVAGTSKKRAHPRD
VEVEVEIPVKKRKAASSSRKKGKQRGKASASPTPPPPRADQIEGEEQEPSPSPDRLVDTQ
DEEVVRRFFALPLDTVVQVGKRIGGSPSLKRLMDLGERAKEYIESFQSGSSS