Protein Info for mRNA_1869 in Rhodosporidium toruloides IFO0880

Name: 10237
Annotation: K14570 REX1, REXO1, RNH70 RNA exonuclease 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 PF00929: RNase_T" amino acids 254 to 402 (149 residues), 30.4 bits, see alignment E=5.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (415 amino acids)

>mRNA_1869 K14570 REX1, REXO1, RNH70 RNA exonuclease 1 (Rhodosporidium toruloides IFO0880)
MQAGPPTLPMAKTLTHTPAVTRQKMLNALYHQFLEIYSPGILPTSLGQQLASEHALRQEE
YLFSRATKATYRNSIISALARLKKRPPARSVEETGTLEEEAERNSKMANEEKGRLTGKRV
AKFVHSVETLRKFSYVVEVPPGPGGDRLTEVGNPTVCERCKKEWVVSSTLTEEDKQACHY
HFGRMVTEKVAGVRQRVYSCCPAVGAAPCQVGPHVFKDEDPAVLHSRVPFVTSISLRQTA
SPDHPSSVDICALDCELVYTTAGMSLARVTVLSSTGSILLDEHIRPPTGVTILDLNTRFS
GVKDEDLEKAVLDVNGVRKALAQFVDEKTVFVGHGLENDLKALRLVHTSVIDTAILFPHP
NGGTWRHSLRNLTKDILKKFIQEGDPTIGHSARDDAEAALELVRWKVKQDADGKV