Protein Info for mRNA_1872 in Rhodosporidium toruloides IFO0880

Name: 10240
Annotation: K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF18477: PIN_9" amino acids 51 to 161 (111 residues), 50.7 bits, see alignment E=2.1e-17 PF04900: Fcf1" amino acids 74 to 170 (97 residues), 126.2 bits, see alignment E=6e-41

Best Hits

Swiss-Prot: 57% identical to FCF1_DICDI: rRNA-processing protein FCF1 homolog (fcf1) from Dictyostelium discoideum

KEGG orthology group: K14566, U3 small nucleolar RNA-associated protein 24 (inferred from 61% identity to ppp:PHYPADRAFT_190857)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>mRNA_1872 K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24 (Rhodosporidium toruloides IFO0880)
MGLGGSSAKQRKTRKFAQTKRMLNPNDQRLEAMPTSLFFSHNEALVPPYRVIVDTNFINL
SLENRVDIVRAMMDVLYAKAIPCISDCVLAELEKLGHQYRLALRVARDPRFERLPCSHKG
TYADDCIVNRVTQHRCYIVATCDRQLRRRLRKVPGVPLMYIAKKRYAIERLPDQAIG