Protein Info for mRNA_1880 in Rhodosporidium toruloides IFO0880

Name: 10248
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 70 to 94 (25 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 362 to 381 (20 residues), see Phobius details amino acids 387 to 405 (19 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 374 (367 residues), 95.1 bits, see alignment E=4.4e-31 TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 17 to 416 (400 residues), 247.7 bits, see alignment E=1.1e-77 PF00083: Sugar_tr" amino acids 17 to 420 (404 residues), 267.2 bits, see alignment E=3e-83

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>mRNA_1880 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSTFEDEFGVLSPFIRGLTVSVILLPSALSGMLAGNVSDKISRKKSISLGAAIFAAGSAL
SAGAKGSLVMLIVARCIAGTGEGLFLGCLGVYLTEISPRHMRSHMLLINQLMTSGAIAAG
FFICYGSANIPNSMGWRFPFILQTITATILAVGAPFLPYSARWLISQGRRDEALAVLDRL
VDPKDIEERRELLAIPPAAVRNRSQIAALKDIWAPGVRGRTTLGAILQVFQQLSGIDFVL
FYAPLLFQQAGLDPSTSSFIASGCTGLVLVACVFAGTFYIEKVGRRKIWMVGGTGTSVCL
FTLGFLYATGAAHTPVGKYAAIIFIELFAVCFTSSWSLITKLYAAEIQPMRTRAAATSTG
QAVNQAVNFVVAISGPAFLARSSSGPYFFYGGCTALGVIFAMFFMHEVRGKSLESIDTTF
EGSALATSWPKVFQTARLTEARLRKNSRSQSTNLPGETRAEIREHIQMETIGENSVFEEE