Protein Info for mRNA_1886 in Rhodosporidium toruloides IFO0880

Name: 10254
Annotation: KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF03765: CRAL_TRIO_N" amino acids 47 to 78 (32 residues), 26.6 bits, see alignment (E = 8.3e-10) PF00650: CRAL_TRIO" amino acids 112 to 258 (147 residues), 123.8 bits, see alignment E=8.4e-40 PF13716: CRAL_TRIO_2" amino acids 125 to 258 (134 residues), 31.5 bits, see alignment E=2.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>mRNA_1886 KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins (Rhodosporidium toruloides IFO0880)
MQEASDKPGKDIPKDDAAKERMKAEQEMRDAKLAFIEYGSVRFMDAYWRLIAMDDPDGIM
LRFLRARKWSPSAGVAMLAACVKWRMGSDVEKIFEKGEEGMKEAEGFIKQMEIGKTYTQG
TDYFGRPVVYIHVAKHRTFDQSPKALEDFVLFQMESIRCLFAPPVDKINMVFDMTGFGIR
NVNWRCILFIVKCLEAYYPESLNVMLIHNAPWVFQGIWKVLAPMLDPVVRNKIQMTKSTE
DLVQHIPKAHLVRELGGTSEWKWQYPPIVPGENAPQQDREGRQKAQAARNALIEEYVEVT
RKWIKTDDPAVTKKRRMIVDKMRAQYHELDPFIRGRGAYHRNGNIVGNGLVVWNYPSSSD
EKSEGEWEVRGYETCRESCLLRAKVTEEELKAGV