Protein Info for mRNA_1898 in Rhodosporidium toruloides IFO0880

Name: 10266
Annotation: K09422 MYBP myb proto-oncogene protein, plant

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00249: Myb_DNA-binding" amino acids 326 to 368 (43 residues), 32.7 bits, see alignment 6.9e-12 amino acids 376 to 421 (46 residues), 55.2 bits, see alignment 6.7e-19 amino acids 428 to 474 (47 residues), 26.4 bits, see alignment 6.7e-10 PF13921: Myb_DNA-bind_6" amino acids 329 to 387 (59 residues), 38.1 bits, see alignment 1.5e-13 amino acids 379 to 425 (47 residues), 38.2 bits, see alignment 1.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (596 amino acids)

>mRNA_1898 K09422 MYBP myb proto-oncogene protein, plant (Rhodosporidium toruloides IFO0880)
MDRMGLAGAGLAQSAGALAGTANTLRDFGTELCTPQPAFLVSDGAMDHDEFAGNADFASL
REMGADADVALAANKAYQAEILKAMDRVDAARKRIGELEIILTALSEDMASAQPADAASP
AAPAAEAPFTELVASTRALGQTTFKISAPGTSDPGLPFFKHYYGKDLPANPDGEARDRYL
SAIRIVAWTPAERARLRQEIVAQNHRMVAKEALKLGRDITQLMAAQDPKWFVENLEGLDW
DQVAVVMERRSPSACRMQWLQHDHPRLNTSSKWAKDELKRLYEIVESREDGVREDSGGWE
GVASELGTNRSGMACLSAYQRRPLPKESWTTEDDERLKEAVVWWGENWQVVARHVQRNPT
ACHNRYTNSLLPTLRRGKWSAEEDAKLKFAVQACGKNWTAISERVEGRTDAQCRERWSNI
LDPKVLGTKNWTEEEDATLLRMRDEEQLPWNEISLRGFGGTRTDNHCLRRYTDLKKPPKK
KRKKRAPKRPVSDDEDDFEIAQDDVESAGDGEAEPQAKRQKTASGTRGRGRGRGRGRGRG
GEMARAASTREKEEAGEQEHENGVEGGAPEQQEAELAEEDGMATRRSTRKRAARDQ