Protein Info for mRNA_1900 in Rhodosporidium toruloides IFO0880

Name: 10268
Annotation: K15071 RCY1, POF6 recyclin-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 PF00646: F-box" amino acids 27 to 66 (40 residues), 30.5 bits, see alignment (E = 2.6e-11) PF07393: Sec10" amino acids 266 to 1024 (759 residues), 434.3 bits, see alignment E=1e-133

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1039 amino acids)

>mRNA_1900 K15071 RCY1, POF6 recyclin-1 (Rhodosporidium toruloides IFO0880)
MERWTALMPDRAPALGTLPARPRLIGRLPEEAWVCVLQFLPVPDLPQVALCSRKLASIAR
DDRLWKMKLCCLGYHGPGEIDWRDGKEVMEGTRTVVADGRVAEAEARQGDVNGSKAADVV
YESSDDEFGDFFEGDKEAKPRATGADDGFGDFQDGDLEAEDPFGLAEDFPTVALGDAPPR
TKPPPADDLLLMFDDDVAPPTSVPAPPKPRRPPPVSKLTFETPIAAGSPTTPSSKPGAFT
FNPSTPTSATPTSAGPSQTFLTLYKKHHAILLPYYISLQTLTTSSLVFTTSTLTPMLRAQ
LLASLARFCHPLVAPTRSLPQRMTVLRNVQSAIDFFESALLAEFERADSIQDEQAMKEKA
EVMWELNQSTTVSQVFVQKRETLFGTNHYPLRNLTKIETPSGAEADGIDFSAMDRFMSNN
ISVLSREGSLIARVFPPDAKVLLYFLERIANDVVSDYIAQLLGAAQPLQNPLFLLATAAT
FGQVYRLVDAVLAIEPKNPLITKDAAEDVIFKMFEPQMDDYLSEEGEWIREVLEGMCEEW
DRKTASALAVSDPTFLASSNPAQVKKNVLAGFTKVLLLPVTIIPKTASYGLNAITYGATG
VIDTFASLGTQLSGNRTPTVAPAASSSASSIVEAPPPPPSVPIASLPIESSASAWGGDDE
VAQAGRLSVDANGTISVANGNAHDIPLSSAPSSASTPPPRPATRSRFDRLQLLLSLDTAL
QLIQADRDSLKRIQTFIRYPGTYGRKVRDAIEEVFIVLLQVLGENHVCPAFEKAKMQMET
YKPEDHDDDQDVAPLVQFFELVHIGDTIQQMVDVYFEKEMNAYIDKRDFLNVVVREKKKF
ETSLDDAVAQGLNAAVNILMGQVEHVITSRQGIRDYTPDESEDLDLQPTRACKDAIQVLS
KHCDMLKGSTDKQILEVFNQEVGIRLHGILLKHLKRQIVSTLGGLQLIADLNAYHAFVTS
LRQPQVTAYFTSLKMVGELFLIESPKDLGALVRDTTRYEGTLSPDDLYELVQRRADWSKI
ERIVDKQLFSLSAQDCCLQ